Oncorhynchus tshawytscha (Chinook salmon): 112263480
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Entry
112263480 CDS
T05605
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420
Nucleotide excision repair
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112263480
09124 Replication and repair
03420 Nucleotide excision repair
112263480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112263480
03400 DNA repair and recombination proteins [BR:
otw03400
]
112263480
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
112263480
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
112263480
TCR (transcription coupled repair) factors
Cul4-CSA complex
112263480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
112263480
NCBI-ProteinID:
XP_042186711
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All DBs
Position
LG12:complement(55452809..55482138)
Genome browser
AA seq
1139 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDSGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLNGEEVEETELPGFVDNLQTFYCGNVAHQQLIQITSGGVRLVM
QDSKALVSEWKEPQGRNISLAACNSSQVVLAVGRALYYLQILSGELKQISTVEMEHEVAC
LDITPLGEGGESPLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEASYY
LLCALGDGALFYFGLDLTTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIYS
SNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESP
RRICYQEVSQCFGVLSSRVEMQDASGTTAAVRPSASTQALSSSVSSSKLFPSSTSPHETS
FGEEVEVHSLLVVDQHTFEVLHAHQFLQSEYALSMVSCRLGRDLSVYFIVGTAMVYPEEA
EPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT
ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD
DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFSHGSLVLQNLGESS
TPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERK
TEQATGFIDGDLIESFLDLGRAKMQEVISTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtataattacgtggtaacagcgcagaaaccgacggcagtcaatgcctgcatcacc
ggccacttcacctctgcggaggacctgaatctgctcatagctaaaaacacacgcctggag
atctatgtggtcacagcggaagggctccggcctgtcaaagaggtgggcatgtacggcaag
atcgccgtcatggagctcttcaggccaaagggggaaagcaaggacctgctgttcattctc
actgccaaatacaacgcctgcatcctggagtacaaacagaacggggagagcatcgacatc
atcactcgcgcccacggcaacgtgcaggaccgcatcgggcgaccctcggagacgggcatc
atcggcattgtagaccctgagtgccgcatgatcggcctgcggctttacgacggcctattc
aaggtgatcccgttggaccgggagaaccgagaactcaaggccttcaacatccgcctggag
gagctgcaggtcatcgacgtccacttcctgtatggctgtcaggcgcccacagtctgcttc
atctatcaggaccctcaaggacggcatgtaaagacctacgaggtgtcgctgagggagaag
gagttcaacaaggggccgtggaaacaggagaacgtggaggcggaggcttctatggttatc
ccagtcccagaaccatttgggggggctataatcattggacaagaatccatcacctaccac
aacggggataaatacttggccatcgcacctcccaccatcaagcaaagcaccattgtctgt
cacaaccgtgtggaccccaacggctcgcgctacctgctgggggacatggagggccgcctg
tttatgctgctgctggagaaggaggagctgatggacggggccgtggtgctcaaggacctc
cgcgtcgagctgcttggagagacgtccattgcggagtgcttgacctacctggacaacggt
gtggtgtttgtgggttccagactgggcgactcccagttggtcaagctcaatgtggacagt
aacgactcagggtcgtacgtggcggtgatggagaccttcaccaacctggggcccatcgtg
gacatgtgtgtggtggacctggagagacagggacagggccagctggtcacctgctctgga
gcgttcaaggagggctccctcaggatcatccggaatggtatcgggatccacgagcacgcc
agcattgacctgccagggatcaaaggtttgtggccccttcgctcagaggctgggagggag
acagacgacatgctggtcctgtctttcgtcggccagacaagggtgctgatgctaaacggg
gaggaggtggaggagactgagctgcctggctttgtggacaacctgcagaccttctactgt
ggcaacgtggcccaccagcaactcatccagatcacgtcaggcggtgtgcgtctggtaatg
caggacagcaaggccctggtgtctgagtggaaggagccgcagggccggaacatcagcttg
gccgcatgtaactcctcccaggtggtgctggccgtgggccgcgccctctactatctccag
atcctctctggggaactcaaacagatcagcacggtggagatggagcatgaggtggcctgc
ctagacatcacgcccctgggggagggcggagagtcgcccctctgtgccgtgggcctatgg
acggacatatcggcccgagtcctcaagctgccctgcttcaccgccctgcacaaggagatg
ctcggaggagaaattatccctcgctccatcctgatgacgacgttcgaggccagctactac
ctgctgtgtgccctgggagacggagcgctcttctactttggcctggacctgactacaggc
gtgctgagcgagcggaagaaggtgactctgggcacccagcccacggtgctgaggaccttc
cgttccctttccacctccaacgtgtttgcctgctctgaccggcccaccgtcatctactcc
tccaaccacaagctggtcttctccaatgtcaacctcaaggaggtcaactacatgtgtccg
ctcaactccgagggctaccccgacagtctggcgctggccaacaacagcactctcaccatc
gggaccatcgacgagatccagaagctccacattcgcacggttcccctctacgagtctccc
aggaggatctgttaccaggaagtgtctcagtgtttcggggtgctgtccagccgcgtggag
atgcaggacgccagcgggaccacggcagcggtgcgccccagcgctagcactcaggctctg
tctagcagtgtgagctccagtaagctgttccccagcagcacctccccacacgagacctcc
ttcggggaggaggtggaggtgcacagcctcctggtggtcgaccaacacacctttgaagtg
ctccacgcccaccagttcctccagagtgagtacgccctcagcatggtgtcctgccgcctg
ggcagggacctctcggtctactttatcgttggcacagcaatggtctacccagaggaggcg
gagcccaagcaaggccgcatcatcgtcttccactacactgacggtaagctgcagacggtt
gcagagaaggaggtgaagggagccgtctactccatggtggagttcaatggcaaactgctg
gccagcatcaacagcacagtgcgtctgtacgagtggaccgctgagaaggagctgaggacc
gagtgtaaccactacaacaacatcatggcactctacctaaagaccaaaggagacttcatc
ctggtgggagacctgatgaggtctgtgctgctgctggcctataaacccatggagggcaac
tttgaggagattgcccgtgacttcaatcccaactggatgagtgctgtggagatcctggac
gatgacaacttcctgggggcggagaatgccttcaacctctttgtgtgtcaaaaagacagc
gcggccacgacagacgaggagcgacaacacctgcaggaggttggcgtgttccacctgggg
gagtttgtcaacgtcttctcccatgggtcactggtgctgcagaacctgggcgagagctcc
acccccacgcagggctccgtgctcttcggcaccgtcaacggcatgatcggtcttgtgacc
tctctgtccgagggctggtacagcctgctgctggacctgcagaatcgactcaacaaggtc
atcaagagcgtgggcaagatcgagcacagcttctggaggtccttccatacggagcgtaag
actgagcaggccacgggcttcatcgacggggacctcatcgagagcttcctggacctgggc
cgcgccaagatgcaagaggtgatcagcacgctacagattgacgacggcagcggaatgaag
cgcgaggccaccgtggatgaggtcataaagattgtggaggagctgacaaggatccactag
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integrated database retrieval system
