Oncorhynchus tshawytscha (Chinook salmon): 112263857
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Entry
112263857 CDS
T05605
Symbol
irx5a
Name
(RefSeq) iroquois-class homeodomain protein IRX-5
KO
K24889
iroquois-class homeodomain protein IRX
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112263857 (irx5a)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
112263857 (irx5a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
PGA2
Motif
Other DBs
NCBI-GeneID:
112263857
NCBI-ProteinID:
XP_024296264
UniProt:
A0AAZ3RN33
LinkDB
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Position
LG12:71945500..71949084
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AA seq
451 aa
AA seq
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MAYPQGYLYQPSASLALYSCPAYSTSVISGPRTEELGRSSSGSAFAPYAGTTAFTSASPG
YNSHLPYSAEAGAAATFASYVSSPYDHTTGMAGSIGYHPYAAPLGSYPYGDPAYRKNATR
DATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPR
NRSEDEEEDENIDLEKNDDDEPSKPTDKGDSTDTESDHKLLNPGDIVCDRFKEENHGKET
DPLLSDSELKDQGDRTELLPESAKPTTSSPTAVPRGGTELVAQDKPSEMGHAPGTVNSNV
TSVIHSSPSAPKPKLWSLAEIATSSDRCKSSSDGPQGHGMGHSTVITTNAASPSRSSPQC
PLPNSTVLSRPIYYTSPFYPGYTNYGSFGHLHSHSNHGSGTGSTAHFNGLNQTVLNRAEA
LVRESQKGRGQTQVDLCKDSPYELKKGMSNI
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatcctcagggctatttgtaccagccatccgcttcgttggcgctgtattcatgc
ccggcgtacagcaccagcgttatatcgggacccaggaccgaagaacttggtagatcctca
tctggctcagcttttgctccctatgccggaactaccgcgttcaccagcgcttcgcccggg
tacaactcccatctcccgtacagtgcggaggcgggagcggccgccacattcgcttcatac
gtgagttctccctatgaccacacgacgggcatggctgggtctataggatatcacccctac
gctgctcccctgggttcatacccctacggtgacccggcataccgaaaaaacgcgacccgg
gatgccaccgccactctcaaagcatggttgaacgagcaccgtaagaacccctaccccacc
aagggggagaagatcatgctggccatcatcaccaaaatgaccctcacccaagtttccacc
tggttcgccaacgccaggaggaggctaaagaaggagaacaagatgacctggactccccga
aaccggagcgaggacgaggaggaagacgagaacatcgatctggaaaagaatgacgacgac
gagcctagcaagccgacagacaagggagactcaacagacacagagtcagatcataaattg
ctgaacccgggggacatagtgtgcgacagatttaaagaggagaatcatggcaaagaaacg
gatccccttctgagcgactcggaattaaaagaccaaggggatcggacagagttactgccc
gagtctgctaaacccaccacctcgtctccaaccgccgtgcctcggggaggaaccgagctc
gttgcgcaagacaagccgtcagaaatgggccatgcgccgggcacggtaaacagcaacgtg
acgtctgttattcactcctccccatcggcccctaaacccaaactctggtccctggctgag
atcgcaacgtcctcagacaggtgtaagagcagcagcgacgggccgcagggccatgggatg
ggtcacagcacagtgatcaccaccaatgcagcgtcaccatcacggtcctccccacagtgc
cctctcccaaacagcacagtcctatccaggcctatctactacacgtcccctttttacccg
ggctacacgaactatggcagctttggacatcttcacagtcacagtaatcacggctcgggc
acgggctccacggcacatttcaatggattaaaccagactgtgttaaatagagcagaagct
ttggtaagagaaagccagaaaggcagaggccaaacgcaggtagatctttgtaaagactcc
ccttatgaactaaagaaaggtatgtcaaacatttaa
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