Oncorhynchus tshawytscha (Chinook salmon): 112263882
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Entry
112263882 CDS
T05605
Symbol
neo1a
Name
(RefSeq) neogenin 1a isoform X1
KO
K06766
neogenin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04350
TGF-beta signaling pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
112263882 (neo1a)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112263882 (neo1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112263882 (neo1a)
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
DCC/UNC5 family
112263882 (neo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
Pur_ac_phosph_N
ig
Ig_DSCAM-DSCAML_C
V-set
Interfer-bind
Tissue_fac
SusE
Sp38
EphA2_TM
Bile_Hydr_Trans
Herpes_UL74
DUF4834
Motif
Other DBs
NCBI-GeneID:
112263882
NCBI-ProteinID:
XP_042173431
LinkDB
All DBs
Position
Unknown
AA seq
1506 aa
AA seq
DB search
MAERGARLLLSLLCLTFLYPATTVSRHAEKGTAARPFSPFWFSVEPWDTLAVRGAPALLN
CSAHSGDPASEPTAPQARVEWKKDGTFLSLAPDDGRRRVLPDGSLLISSVVHSKHNKPDE
GTYQCVATIDSLGTIASRTARLTVAGMPRFSSQPAAASIRLGDSQVLACDVNPDLVPLAR
WEREREPLELSSRLVQLPNGALVVSNASEADAGLYRCMVENAGPAKTSEEAQLTILPETG
EERQLEFLVEPLPVTKVVGASLLLPCVVTGYPTPYVRWMVGDKLVEESEGKLELVGGGSL
LIYNLTEEDAGVYSCMADITNNTIEAKAELTVQVPPEFLKRPANIYAHESMDIMFQCEVT
GSPAPTVKWVKNGDAVIPSDYFKIINEHNLQVLGLVKSDEGFYQCLAENDAGNMQSSAQL
IILEHDVALPTPPPPSLTPDTTDHVTPGSRGVANPTGPTPSAPRDVVASLVSTRFIKLTW
RPPAEPNGEDLTYSVYFNQEGTNRERILNTSRPGEMQVTIQNLMPDSKYKFRVVAHNKNG
LGESSAVLKVATQGEVQVPGPAPNLQAVSTTPTSVTLSWDTPLTGNGDVLTYKVYFMEKG
LDLEQDIDAGALSYTLMGLKKFTEYSIRVVAFNKHGPGVSTGDITVTTLSDVPSAPPQNL
TVEVHNSKSIMVRWQPPPPGAQNGEITGYKIRYRKGTRKSEAAETTGGTQLFQLIDGLER
GTEYTFRVSAITVNGSGPATEWSTAETFESDLDESRVPDIPSSLHVRPLVNSIVVSWTPP
ENQDMVVRGYTIGYGIGSPHAQTIKVDYKQRYYSIENLDPSSHYVITLKAFNNVGEGIPV
YESAITRPQSDPIDPDVDLYELFHAPYTPVPDPTPMLPPVGVQASVLSHDTIKVTWADNS
LPKNQKITDARYYTVRWKTNIPANTKLKTANTTNLSHMVMGLKPNTLYEFSVMVTKGRRT
STWSMTAQGTTFETIPSSSPKDVTVVSKELKPRTIIVNWQPPSEANGKITGYIIYYSTDV
NAEVHDWVIEPVVGNRLTHQIQELTLDTTYYFKIQARNSKGMGPMSEAVHFRTPKTESSD
KMANDQANLPVKPGSNQPPLDHGFGSSHGKPGITGSGDNHILVIVVIISVGAFTIIVVVV
GAFLCTRRTTSHQKKKRAASKSSNSSHKYKGNSKDLKPPDLWIHHERLELKPIDKSPEPN
PVMTDTPIPRTSQDINPVDPSLDNSLLQRRNSYRGHESEDSISALAGRRGMRPKMMMPFD
TQPPQPVISAHPIHSLDNHHHHYHTGSLASPTRSYLHHHQGSAHLRPHACATPISYLDMV
GSTESVRNTPSTEPLPPQAQPPCQAEHQHPEPEGSYQDSAATDDEPSASGSYCSAGQPPT
AHVRPTHPLKSFAVPANPAAIFESPALPSMPLLTQTGPQLHSVKTASIGTLGRVRPPMSV
TVPDVPETSKMLEDVDSVLASLPSCSSLAPRSNPVPFPQSYEPDELTEEMAHLEDLMKDL
NAITTA
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggggagcaaggttgctcctctctctcctctgtctcacctttctttacccg
gcgaccaccgtgtcaagacatgctgaaaaaggcacggcggcgaggcccttcagccccttc
tggttctcggtggagccgtgggacacactggccgtgagaggtgccccagcactgctcaac
tgctcagcgcacagcggggaccctgcctcggagcccactgcgccccaggcccgtgtggag
tggaagaaggatggaaccttcctgagcctggcgccagacgacgggcggcggcgtgttctg
cctgacggctcgctgctcatctctagcgtggtgcactccaagcacaacaagcccgacgag
ggcacgtaccagtgtgtggccaccatcgacagcctgggaaccatcgccagccgcaccgcc
cgcctcactgtggcaggtatgccccggttctccagccagccggcagcagccagcatacgc
ctgggagacagccaggttctggcctgcgatgtcaacccagacctggtgcctttagcccgg
tgggagcgtgagcgtgagcccctggagctgagctctaggctggtgcagctacccaacgga
gccctggtggtgagcaacgcttcggaggccgacgctgggctctaccgctgcatggtggag
aacgctgggcccgccaagaccagtgaagaggcccagctcacaatactgccagaaaccgga
gaggagagacaactggagttcctggtagagccacttcctgtgaccaaagtggtgggggcc
agtttgctgctgccgtgtgtggtgacgggttatccaacgccctacgtccgatggatggtg
ggagacaagcttgttgaggagagtgaggggaagttggagttggtgggaggaggcagtctg
ttgatctacaacctgactgaggaggatgcaggcgtctacagctgtatggcagacatcact
aacaacactatcgaggccaaggcagagctcactgtacaagttcctccggagttcctgaag
aggccggccaacatctacgcccacgagtccatggacatcatgtttcagtgtgaggtcaca
ggttcccccgcccccaccgtcaaatgggtcaaaaacggagacgctgtcattcccagcgac
tacttcaaaatcattaatgaacacaacctgcaggtgctgggtctggtcaagtctgatgag
ggcttctaccagtgtctggcagagaacgatgcagggaacatgcagtccagcgctcagctc
atcatcctagagcacgatgtagccctccccacccctcctcccccctcactgactcctgac
actactgaccatgtaacgccaggctccagaggtgtggctaaccccactggccccaccccc
tccgccccccgtgacgtcgtggcctcgctggtctccacccgcttcatcaagctcacctgg
cgccctcctgctgagcccaacggagaagacctcacctactctgtctacttcaatcaggag
ggtaccaacagggagcgtatcctgaacaccagtcggccaggtgagatgcaggtcaccatt
cagaacctgatgcccgactccaagtacaagttccgggtggtggcacacaacaagaacggc
ctgggagagagctctgccgtcctcaaggtggccacccagggtgaagtgcaagttcctggc
cccgcccccaacctgcaggctgtgtcgaccacacccacctccgtcaccctcagctgggac
acgcccctcactggtaacggagacgtcctcacctacaaggtctactttatggagaagggt
ctggacctggaacaggacatagacgctggagctctgtcctacaccttgatgggtctgaag
aagttcacagagtacagcattagagtggtggccttcaacaagcacggtccgggagtgtcc
acaggagacatcaccgtcaccaccctgtctgatgtccccagtgcccctcctcaaaacctc
actgtggaagttcacaactcaaagagtatcatggtccggtggcagcccccaccaccaggc
gcccagaacggcgagattactgggtataagatccgttaccggaaaggaacgcggaagagc
gaggcggcagaaaccacgggaggcacccagctcttccaactcatcgacggtctggagcgg
gggacagagtacacgttcagagtatcagccatcacagtgaacggctccgggcccgccaca
gagtggagcaccgcagagaccttcgagagcgacctggacgagtccagggtgccagacatc
cccagctcgctacatgtgcgcccgctggtcaacagcatcgtggtgagctggacgccgccg
gagaaccaggacatggtggtacgaggctacaccatcggctacggcatcggcagcccccac
gcccagaccatcaaggtggactacaagcagcgctactacagcattgagaacctagacccc
agctcccactatgtgataaccctgaaggccttcaacaacgtgggggaggggatccctgta
tacgagagcgccatcaccaggccacagtcagaccccatagaccctgatgttgatttgtat
gaactcttccatgcgccatacacaccagtaccagaccccacccccatgctacctcccgtg
ggcgtacaggcctcggtgctcagccacgacaccatcaaggtgacctgggccgacaactct
ctgcccaagaaccagaagatcacggacgcacgctactacacggtgcgctggaagaccaac
atccccgccaacaccaagctcaagacggccaacaccaccaacctgagccacatggtgatg
ggcctgaagcccaacacgctctatgagttctctgtcatggtgaccaagggccggaggacc
agcacctggagcatgacagcccagggaaccacctttgagaccattcccagctcgtccccc
aaagatgtgactgtggtgagcaaggagctgaaaccacgtaccatcatagtcaactggcag
cccccctcagaggccaatggaaaaatcacaggctacataatctactacagtactgatgtg
aatgcggaggtgcatgactgggtgatagagccggtggtgggcaacaggttgacccaccag
atccaggagctgactctggacaccacctactacttcaagatccaggcccgtaactccaag
ggcatgggcccaatgtccgaggccgtacacttccgcacccccaagactgaatcctctgac
aaaatggctaatgaccaagccaatttgccagttaaaccgggaagtaaccaaccacctctt
gaccatggctttgggtcttcacacggaaaaccaggaattacaggaagtggggacaaccac
atcctggtcatcgtcgtcatcatctctgtgggagcgttcaccatcattgtggtggttgtg
ggggccttcctctgcacacgacgcaccacctcccaccagaaaaagaagcgggcggcctcc
aagtcgtccaacagctcccacaagtacaagggcaactccaaggacctgaagcctccagac
ctatggatccaccacgagcggctggagctcaagcccattgacaagtcccccgagcccaac
ccggtgatgactgacacccccatcccccgcacctcgcaggacatcaaccccgtggacccc
agcctggacaacagcctgctgcagagacggaactcctaccgaggccacgaatcagaagac
agcatatctgcgctggcagggcgccgggggatgcggcctaaaatgatgatgcccttcgat
acgcagcccccccagcctgtgattagcgctcaccccatccattcccttgataaccatcac
caccattatcacacgggcagcctggcatccccgacacgcagctacctccatcaccaccag
ggcagtgcccacctgcgcccgcacgcctgtgccacccccatctcctatctagacatggtg
ggctccacagagtcggtgaggaacacccccagcacagagcccctcccaccccaggcccag
cccccctgccaagccgagcaccagcacccggaacccgagggcagctaccaagactccgcg
gccaccgacgatgagcccagcgccagcggcagctactgcagcgccggccagccccccacc
gcccacgtgcgccccactcaccccctcaagagctttgccgtgcccgccaaccccgccgcc
atcttcgagtcgcccgccctgcccagcatgccgttgcttactcagactgggccccagctc
cactcagtaaagacagcctccatcggcaccctgggcagggtgcgcccccccatgtcagtc
acggtgccagacgtgcccgagaccagcaagatgctggaggatgtagacagtgtccttgcc
tccctcccctcctgttcctcccttgctccccgcagtaaccctgttcctttccctcagagc
tacgagcctgatgaattgacagaggagatggcccacctagaggacctgatgaaggacctg
aacgctataaccacagcctga
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integrated database retrieval system
