Oncorhynchus tshawytscha (Chinook salmon): 112264110
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Entry
112264110 CDS
T05605
Name
(RefSeq) transient receptor potential cation channel subfamily M member 3
KO
K04978
transient receptor potential cation channel subfamily M member 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112264110
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112264110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
TRPM_tetra
LSDAT_prok
Ion_trans
Motif
Other DBs
NCBI-GeneID:
112264110
NCBI-ProteinID:
XP_042187033
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All DBs
Position
LG12:complement(38565370..38704518)
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AA seq
1720 aa
AA seq
DB search
MTKPLLESAKLESAQPSQTQEIPAMKAQLEEEKQMETTSLAGKFQAQKSWIERAFSKREC
VHIIVSAKDPHRCFCGRLIGQHVGLPPGISSSQNDKAERLVKNDSLSEKWSISKHTQLSP
TDAFGTIEFQGGGHSNKAMYVRVSYDTKPELLLHLMTKEWQLDLPKLLISVHGGLQNFEL
QPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDHASKSRGKICTIGIAPWG
IVENQEDLVGKDVVRPYQTMSNPLSKLTVLNSLHSHFILADNGTTGKYGAEVRLRRQLEK
HISLQKINTRIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCDGSGRASDILAFG
HKYSEEGGIINESLRDQLLVTIQKTFTYSRTQAQHLFIILMECMKKKELITVFRMGSEGH
QDIDLAILTALLKGANASAPDQLSLALAWNRVDIARSQIFIYGQQWPVGSLEQSMLDALV
LDRVDFVKLLIENGVSMHRFLTLSRLEELYNTRHGPSNTLHHLVRDVKKGNLPPDYRISL
IDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFGPKRPKALKLLGMEDDMPIRRSRQKTTR
KREEEVDIDLDDPEINHFPFPFHELMVWAVLMKRQKMALFFWQHGEEAMAKALVACKLCK
AMAHEASENDMVDDISQELNHNSREFGQLAVELLDQSYKQDEQMAMKLLTYELKNWSNAT
CLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNSGLKVILGLLLPPSILSLEFKNKD
EMSYMPQDQDTYLQEKEEEEPEPAKENEEEDMEFTAMLGKVSTEASRKKGVGEVQNRHRL
IPMGRKIYEFYNAPIVKFWFHTMAYVAYLMLFNYIVLVKMDLWPSPQEWIVIAYIFTNGI
EKMREILMSEPGKLLQKVKVWLQEYWNITDLMAILIFSVGMVLRLQEPPFMSYGRVIYCV
NIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVVLMSFGVARQAILNPNED
PSWMLARNIFFMPYWMIYGEVFADQIDPPCGQNITADDGHVVILPPCKTGAWIVPAIMAC
YLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFYERPILPPPLIIFSHMT
MVLKHLCCRWRKHDDEERDYGLKLFITEDELKKVHDFEEQCIEEYFREKDDRFNSSNDER
IRVTSERVENMAMRLEEVNEREHFMKASLQTVDIRLAQMEELIGRIAVALERVTGVEQGE
VNKARSRTSSDCTDSAYVLRQGECPDAAYFLRQSSFNSQEGNSYRLNEGAEGSMSPPSPT
SLAMRTRSHSFYVGGGRERAGADRAHRFLKEHSFSLQRANSSQSVALCSAPKESKPLPLA
TLSVSQQHRPSSCVDIFVSASEEEGPAKVFFDPLRMAPPLRPDSSLHSEIMEAVLSSGRD
YGGGSGLGDRHSEGGAVYEDSVAADLSLCSANLLPDNTVPLWELDPSPPPSAGLLERSKS
SRYLSTGGGGYLEEPQLVKSHSLMFTPRGCYGGLGAGVQVKAAEYTSITDCIDTRCVSAP
YSTDDCCHSPGGSTSFPFDKPPDMSSSHPEREAELSHTESEPEDLEEMAPAPKPRRTGSG
LGGASGTPFCSPFSRLERANSCSSDDSSHPSLAPPPHRKSLSVSERMERGADHGVLGEPR
NPFLRSKSGVRPDAKTDSLSMRKLTTPSAFRSFHSRHNYT
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagccgctgctggagtcagcgaagttggagtcagcgcagccgtctcagacacag
gaaatcccagcgatgaaggcgcagttagaggaggagaagcagatggagacaacttccttg
gcaggcaagttccaggcacagaaatcgtggatagaaagagccttcagcaagagagaatgt
gttcatatcatagtgagcgccaaagacccccataggtgcttctgcggccgtctgattggt
cagcacgttggcctgccccccggcatctcctccagtcagaatgataaggcggagcgtctg
gttaagaatgacagcctatcggagaaatggtctatcagcaaacacacccagctcagcccc
accgacgccttcggaaccatcgagttccagggagggggccactctaacaaagccatgtat
gtgcgtgtgtcctatgacaccaaaccagaactcctgctgcaccttatgactaaggagtgg
cagctggaccttcccaagctgctcatctcagtgcatgggggcctgcagaactttgagctg
cagcccaaactcaaacaggtctttggcaagggcctcatcaaggctgccatgacaacagga
gcctggatcttcactggcggggtcaacacaggggtgatccggcatgtgggtgatgcgctg
aaggaccatgcctctaaatcccgggggaagatctgcactatcggcattgccccctggggc
attgtggagaaccaggaggacctggtgggaaaagacgtggtccgaccgtatcagaccatg
tccaacccgctgagcaagctgactgtgctcaacagcctgcactcccatttcatcctggct
gataatgggacaacagggaagtacggtgcagaggtcagactgcgtagacagctcgagaaa
cacatctccttgcagaaaatcaacacacgtattggtcagggagtgccagtggtggctctg
atagtggaggggggtcctaatgtgatctccatcgtgttagagtacctaagggacacgcca
cctgtgcccgtggtggtgtgtgatgggagcgggcgcgcttcggacatcctggcatttgga
cacaagtactctgaggagggagggatcataaatgagtctctgagagaccagttgctggtg
accatccagaagaccttcacgtacagccggacccaggcccagcacctcttcatcatcctc
atggaatgcatgaagaagaaggagctgataaccgtttttcggatggggtctgagggacac
caggacattgacctggccattctcactgctcttctaaaaggtgccaacgcatcggctcct
gaccagctcagcctggccctggcgtggaaccgagtggacattgcccgcagccagatcttc
atctacggacagcagtggcctgtgggttctctggagcagtctatgttggatgccctggtg
ctggacagagtggacttcgtcaaactgctgatcgagaacggagtgagcatgcatcgcttc
ctcaccctctccagactggaggagctctacaacacgaggcatggaccatccaacacacta
caccacctggtcagagacgtcaaaaagggtaacctgccaccagactaccgcattagtctc
attgacatcggattggtcattgagtacttgatgggcggagcttacagatgcaactacacc
aggaagaggtttagaactctgtatcataacctctttggacccaaaagacccaaagccctg
aaactgctggggatggaggatgacatgccgatccggaggagtcgccagaagactacacgt
aagcgagaggaggaggtggacattgacctggacgaccctgagatcaaccatttccccttc
cccttccacgagctgatggtgtgggccgtgctgatgaagagacagaagatggcgctgttc
ttctggcagcacggggaggaggccatggccaaagccctggtggcctgtaagctgtgcaag
gccatggcccacgaggcctccgagaacgacatggtggacgacatctcacaggagctgaac
cataactccagagagtttggacagttggctgtggagctgctggaccagtcatacaagcag
gacgagcagatggccatgaagttgctgacctatgagctgaagaactggagtaatgccacc
tgcctgcagctggccgtggccgccaagcaccgtgacttcatcgcccacacctgcagccag
atgctgctcactgacatgtggatgggacgcctgcgcatgcgcaagaactctgggctgaag
gtgatcttgggcctgctgctgcctccgtccatcctgagtctggagtttaagaacaaggat
gagatgtcgtacatgcctcaagaccaggacacctacctgcaggagaaggaggaggaagag
cccgagcccgccaaagaaaatgaggaagaggacatggagttcacagccatgctgggtaag
gtaagcacggaggcgtctcgtaagaagggtgtgggggaggtccagaatagacaccggctc
atccccatgggccggaagatctacgagttctacaacgcccccatcgtcaagttctggttt
cacacaatggcctatgtggcgtatctgatgctgtttaactatattgtgctggtgaagatg
gacctgtggccctcaccgcaggagtggattgtcatcgcttacatcttcaccaatggcatc
gagaagatgagagagattctgatgtcggagccagggaagctgttgcagaaggtgaaggtg
tggctccaggagtactggaacatcacagacctcatggccatcctcattttctccgtgggc
atggttctccgtctccaggagccgccattcatgagctacggaagggtcatctactgcgtt
aacattatctattggtacatccggctgctcgacatctttggcgtcaacaagtacctgggc
ccatatgtcatgatgatcggcaagatgatgattgacatgatgtactttgtgataatcatg
ctggtggtgttgatgagttttggggtggctcggcaggccatcctgaaccccaatgaggac
ccgtcctggatgctggctcggaacatattcttcatgccctactggatgatctatggagag
gtgttcgccgaccagatcgaccctccgtgtggccagaatatcaccgcggacgacgggcat
gttgtgattctgccgccatgtaagacgggagcctggatcgttcctgccatcatggcctgc
tacttgctggtggccaacatcctgctggtcaacctactcatagctgtcttcaacaacacc
ttctttgaggtgaagtccatctccaaccaggtgtggaagttccagagataccagctcatc
atgaccttctacgagcggcccatcctcccccctcccctcatcatcttcagtcacatgacc
atggtcctcaagcacctgtgctgtcgctggcggaagcacgacgatgaagagagagattat
ggccttaagctcttcatcactgaagacgagctgaagaaagttcatgactttgaggagcag
tgcattgaggagtacttccgtgagaaagatgaccgcttcaactcttcgaatgacgagagg
atccgagtgacgtcagagagagtggagaatatggctatgcgtctggaggaggtgaatgag
agagaacatttcatgaaggcatctctacagaccgtggacatccgtctggcccagatggag
gagctgattggtcggattgctgtggctctggagcgagtcacgggagtggagcagggagag
gtcaacaaggcccgctctcgcacctcctccgactgcacagactcagcctacgtgctgcgt
cagggtgagtgcccagatgcagcatactttttgcgccagagcagcttcaacagccaagag
gggaactcctaccgactcaatgaaggtgcagagggctccatgtcgccgccctcccccacc
agtctggccatgcgcacacgcagccactctttctacgtggggggaggtcgcgagcgagcc
ggggccgaccgggctcaccgtttcctcaaggagcactccttcagcctgcaacgagccaat
agttcacagtcggtggccttgtgctctgcccccaaggagtctaagcccctcccactggcc
acgctgtccgtctcccagcagcaccgcccctcttcctgcgtcgacatctttgtgtcggca
tccgaggaggaggggccagccaaggtcttcttcgacccactgaggatggcccctcccctc
cggcctgactcctcgctccactcggagattatggaggcggtgctgtcgagcgggagggac
tatggtggaggtagtgggttgggcgacagacactctgagggtggggccgtgtacgaagac
agcgtggctgcagacctgtcactatgctccgccaacctgctcccagataacactgtgcca
ctctgggaactggacccctctcctccaccatcagcgggcctgctggagcgctccaaaagc
agccgctacctgtccactggcggcgggggctacctggaagagcctcagctggtcaagtct
cacagcctcatgttcacaccgcgagggtgctatggaggcctaggggcaggagttcaggtc
aaagcggctgagtacaccagcatcaccgactgcatagacaccaggtgtgtctctgcccct
tactccaccgacgactgttgccactcccctggaggctccacctcattcccctttgacaag
ccccctgacatgagctcctcccacccagagcgcgaggccgagctcagccacacagagtca
gaacctgaagacctagaggaaatggcccctgcccccaagccccgtcgcacagggagtggc
ttaggaggggcgagtggaacccccttctgctcgcccttctccagactggaacgagccaac
agctgctcctcagacgactcctcccacccatccttggcacctcctccccacagaaaaagc
ctgtcggtcagtgagaggatggagaggggtgcagaccatggggttctgggggaacccagg
aaccccttcctgaggagcaagtctggggtgcggcctgacgccaagacagacagcctctcc
atgaggaagctgaccaccccctctgcgttccgcagcttccacagtagacacaactacacg
tga
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