Oncorhynchus tshawytscha (Chinook salmon): 112264197
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Entry
112264197 CDS
T05605
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112264197
04091 Lectins [BR:
otw04091
]
112264197
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112264197
Lectins [BR:
otw04091
]
C-Type lectins
Others
112264197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Ion_trans
Lectin_C
GPS
DUF7339
Motif
Other DBs
NCBI-GeneID:
112264197
NCBI-ProteinID:
XP_042187044
LinkDB
All DBs
Position
LG12:65438090..65454430
Genome browser
AA seq
2136 aa
AA seq
DB search
MALLLSLSCAEDEMAPLSCPEYQEGFDGSCYEFVALPRSFLSGQGWCERGGGHLAFILNI
DTQQFLQKHLQPEQDWWLGLAPASPNLTLDSAVAEGPLSWLDGSDVSYSNWVNDPDPGAG
CGHILRSSGFQWEATSNCSQELHFICQFVQKNIILQKPIGEFGVIKCYSMNQSTDGANCK
ALYGSPLQIQVEVEAGTNVTYKLHSGEMLVANSSAVRGIVPLNITVGPEVEQQLGSGCHQ
LTLHASNGVSVLGVSTELQVCLLEPVEGLLGSVMAEEGECPDSDLYVSVYLDRGAPVQLL
FQVSGANGSISETRDMQNRSMQVYNISTTIQGFLQVKVRAWNVFSHMDVDVGNTAVVCHN
SSDLRQNGYANTTEKHMRVRRAYTLKITAIPETASQDTESVKLEGALQNCYNNTGKKPLT
ERKDQDGQKEYKVSKNYLKEASDRLQNLHVIVYGKHLRCSSVNKVTLIFLPVGEISSNYM
LSVEVTVTELNTKTRGSTTINTEVRPAKSGTPVQELQSAVAYTVANLGQQGMLSGETLGQ
MFKSVSDILNKGSSQEKNDRMKLREQMLMNLTEALENSSSSTPQKVQLTARAVAGLTKRG
DELSPDAQLEASFLVANLSSSLLSMNVSEHGGEEEMVQAATPIVEAASNILDVSSNVSTY
LPSLSLMTVMKHPYLTVCLSQREVSDLLLKGMDNVQSALLNWKKVDEAPVIVNSSQITVF
VNRVSTETIQMQSISNPISSSASFSFPPLGVDVLSPDEPVDVRMLSFKKNPFSWSEENNI
TGTVGSVSLTRGNGSVIPIENLSEEIEIFLPRPEGVQANSTILYLGNYSTLMVDVPSPDV
TLVLKIKPSKDITFQLFLGYKDDPNDKQYIAKTQMPHQSNTQEEKYTWVLGPKDLTGKVG
VHYLVVRPIVEAGVKSVNATVTVTSIAAQCKYWNETLSTWSEDGCRVGPLTTLLATQCLC
THLTFFGNSFFVMPNLVDVSRTAELFGTFTQNPVVVCFIGSIFVAYVLVVIWARRKDIQD
TAKVKVTLLEDNDPLAEYRYMLNISTGHRRGASTSSQVTVTLMGMQGESEPHHLTDPDKP
VFERGAVDTFLLTTPFSLGELQSIRLWHDNSGGHPAWYINKVMVQDVETGQKWHFLCNSW
LTIDMSECTLDKVFPVATEMDLKKFSNMFFMRTAKDFRDGHIWFSVISRPPTSTFTCVQR
VSCCFSLLLCTMLTSIMFWGIPTDPSEQTMDLGHIEFTWQQLMIGVQSSIIMFPINLLIV
SIFRNTRPRETKPGKPKAEVSKQGKTGRVSPSQPSSPQRDRELTPDTVIKDIKKIAQSLS
KAMKSPIPHLELEMKSGPQTDINTLLSLVEDIIRQQNRVSGEFYTDASKKEGSLILSLGV
TNLQETSMCGSPEKTGDGRQKRSTNSQYLYRQLRHVEKELSLLGPSRFPNPDSYCQAVQQ
VQGMKGLLESSSLAGDELAQSPGQAESSDGDSGSKKCCQDGLPWWFVFIGWILVVATSGV
SGYFTMMYGLTYGKDRSISWLISMVVSFFQSLLIIQPLKVLGFAAFFALVLKKVDQEEYG
DPKIEGALRNPDDPDIVWAVRRDSTRSFYQPPPPTDVERMRNNMIKEQKVFALIKEILTY
MGFMWMLLLVAYGQRDPNAYFLIQHIRQSFSQGISDSMSHGNVFTWANTSLLSNLFGECP
GFITDGNSKLVGNARLRQVRVQKNSCRMARSMRQAVPDCHAPYSWEVEDMGSYGPGWNRS
AGENTSKTLRSPWQYQTQARLRAQPIWGSVVLYRGGGFVVDLGPDSQNASSTLQYLFDNT
WLDMFTRAVFVEFTVYNANVNLFCIVTLMLETTAVGAFQFRSELQSVRLYQSTGGLHIFV
MASEVIYFLFIFYYMYVQGKLMKQQKWAYFKTKWNLLELAIILLSWSALSVFIKRSLLGN
RDMEYYHNHKDQFASFHETATADAVLGYLIAFLVLLATVKLWHLMRFNPKLHMITATLQR
AWTDISGFILVITIMFLAYAMISNLMYGWKLYSYRTLLDSALTMVSLQLGIFNYDEVLDY
NPVLGAFLIGSCIIFMTFVVLNLFISVILVAFTQEQMHHKPSEEEEIVDLMLMKFCSLFG
IKYKKEESNSPKVIANHASVTKQEPSTISSEMLSSQ
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggctctcctcttaagcctgtcttgtgcggaggatgagatggcacctctatcctgccca
gagtaccaagagggttttgacggctcctgttatgagtttgtggctctaccgcgttccttc
ctcagtggacagggctggtgtgagcggggtggtggacacctggccttcattctaaatatt
gatacacagcagttcctacagaagcacctgcagccagagcaggactggtggctgggttta
gcacctgcctccccgaacctaacactggactctgctgttgctgaaggtcctctctcctgg
cttgatggctctgatgtcagctactctaactgggtgaacgaccctgatccaggggctggc
tgtggtcacatactgaggagctcagggtttcagtgggaggcaacaagcaactgtagccag
gagctgcacttcatctgccaatttgtccagaaaaacatcatccttcagaagcccatcggg
gagtttggcgtcattaagtgctatagcatgaaccaatcaacagatggtgcaaactgcaag
gccctgtacggaagcccccttcaaatccaggtagaagtagaagctggtacgaatgtgacc
tacaaactccacagtggtgagatgttggtggccaattcatcagcagtcagaggaatcgtc
cccctcaacatcacagtgggaccagaggtggaacaacagctgggctctggctgccaccag
ctgaccctgcatgcctctaacggggtctcggtcttgggcgtgtccactgagctgcaggtg
tgtctgctggagcctgtggagggcctcctgggatcagtgatggctgaggagggagagtgt
ccagactcagacctctatgttagtgtctacctagaccggggagccccggtgcagcttctc
ttccaggtgtctggagccaacggcagcatctctgagaccagagacatgcaaaacagaagc
atgcaggtttacaatatctcaaccactatccaaggatttttgcaagtgaaagtcagggca
tggaatgtcttctcacacatggatgtggatgtggggaacacagcagttgtttgtcacaac
agttcagacctcaggcagaatggctatgcaaacacaacagaaaagcatatgagagttcgc
cgagcctataccttgaaaattactgccattccagaaactgccagtcaagacactgaaagt
gtcaaacttgagggtgccctgcaaaactgctacaacaacacagggaaaaagccacttacg
gaaagaaaagatcaagatggtcagaaagagtacaaagtgagcaaaaactacctgaaagaa
gcttcagataggcttcagaatctccatgtgatagtttatggtaaacatctgcgctgcagt
tctgtaaataaagtaacgttaatcttcctacctgttggggagataagcagcaactacatg
ctgtcggtagaggtgactgttacagaattgaacacaaagacacgtggaagtaccacaatc
aacactgaggtgcggccagccaagtccggaactccagtgcaggagctccaatctgcagtg
gcgtacacagtggctaatctagggcagcaggggatgctctctggagagacccttggacag
atgttcaagtctgtgtcggacatactgaataaaggctccagtcaggaaaagaatgacagg
atgaagctgcgagaacagatgctgatgaatttaactgaagcactggagaacagctccagc
agcactcctcagaaagtgcagctgacggccagagctgtggcaggactcaccaagaggggt
gatgagcttagtcccgatgctcagcttgaagctagcttcctggtggcaaacctcagctct
tccctcctctccatgaacgtcagtgagcatggtggagaagaggagatggtgcaggcagct
acaccaattgtagaggcagccagcaatatcctggatgtttcctcaaatgtgagcacatat
ttaccttcacttagtctaatgacagtaatgaagcatccttacttaacagtttgtctttca
cagagagaagtctctgatttacttctcaagggcatggacaatgtgcagagtgcactgttg
aattggaagaaggttgatgaagctcctgtgattgtcaacagctctcagatcactgtgttt
gtgaacagagtgtcaacagaaactattcagatgcagtctataagcaacccaataagctcc
tctgcaagcttttccttccctcccctgggtgttgatgtcctttctccagatgaaccagtg
gacgtgcgaatgctaagtttcaagaagaacccattttcatggagcgaggagaacaacatt
accggcactgtggggtctgtctccctgacaagaggaaatggttctgtcatccccatagag
aacctatctgaggagattgagatcttcttgccaaggcctgaaggagtgcaagcaaacagc
acaatactgtacttgggaaactacagcacactgatggtcgacgtcccttcacctgatgta
acactggtgctgaagataaagccatcgaaggacataacctttcagctgttcctggggtat
aaagacgacccaaacgataaacaatacatagccaagactcagatgcctcaccagagcaac
acgcaagaggagaaatacacctgggtcctgggacccaaagatttgacaggaaaagttgga
gtgcattatcttgttgtgaggcccattgtggaagcaggggttaaatccgtcaatgccact
gtgactgtcacctccattgctgctcagtgcaagtattggaatgaaaccttatccacctgg
agtgaagatggctgcagggttggtcctttaaccacgctattggccacccagtgcttatgt
acgcacttgaccttcttcgggaactctttcttcgtcatgcccaacctcgtagacgtgtca
cgtacggctgagctctttggcaccttcacccaaaatcctgtggtggtgtgctttattggt
tccatctttgttgcttacgtattggtggtcatatgggcacgcaggaaggacatccaggac
acagccaaggtgaaggtgacattgttggaagataatgacccattagctgaataccgttac
atgctgaatatcagcactgggcatcggcgtggtgcttccacctcctctcaggttactgtg
actctgatgggcatgcagggagagagtgagccacaccacctcactgaccctgacaagcct
gtgtttgagaggggtgcagtggatacgttcctgttgaccacacccttctctctgggggag
ctgcagagcatcaggctgtggcacgacaactcaggggggcacccagcctggtacataaac
aaagttatggtgcaagatgtagagacaggacagaagtggcacttcctgtgtaactcatgg
ctgaccatagatatgagtgagtgcactctggataaagttttccctgtagccacggagatg
gatttgaagaaattcagcaatatgttcttcatgaggacggcaaaggatttccgtgatggc
cacatatggttttctgtgatcagccggcctccaacgagcaccttcacatgtgtccagcga
gtctcctgctgtttctctctgctgctgtgcaccatgctgaccagcatcatgttctggggc
atccccaccgacccctctgagcagaccatggacctgggtcatatcgagttcacctggcag
cagctgatgattggagttcagagttcaatcataatgtttccaattaatctcctcattgtg
agtatcttcagaaacacccgcccccgagagacgaagcctggaaagcccaaggcagaggtg
tccaagcaggggaagactggcagagtgtctccctctcagccctcctccccacagagggac
agagaactcacaccagacacagtcatcaaggacataaagaagattgctcagtcactctcc
aaggctatgaagagccccattccacacctggagttagagatgaagtctggaccacagact
gatatcaacactctgctctctctggtggaggacatcatccggcagcagaacagagtcagt
ggagagttctacactgatgcctccaagaaagagggatcgctcattctctcactaggggta
accaatctgcaagagaccagcatgtgtgggagccctgagaagactggggatgggagacag
aaaaggagcaccaacagccagtatctgtacaggcagctacgccatgtagagaaggagctg
agcctactgggaccttctcgcttccccaacccagacagctactgccaggcagtgcagcag
gtccagggcatgaagggactgctagagtcttccagcctggcaggggatgagctggctcaa
agtccgggccaagctgagagtagtgatggggacagtggcagtaaaaagtgctgtcaagac
gggctgccctggtggtttgtgtttatcggctggatactggtggtagccaccagcggagta
tcaggatacttcaccatgatgtatgggctgacctatgggaaggaccgctctataagctgg
ctcatctccatggtcgtttctttctttcagagcctcctaatcattcagccgctgaaagtg
ctaggttttgcagccttctttgctctcgttctgaagaaagttgatcaggaggagtatggg
gatccaaaaattgagggggcactcagaaacccagatgaccctgatatagtctgggctgtc
aggagggatagcacacgtagcttctaccagcccccgccacccacagacgtcgagaggatg
aggaacaacatgatcaaggagcagaaggttttcgccctcatcaaagagattctcacctac
atgggtttcatgtggatgttgctccttgtggcgtatggtcagcgggaccctaacgcttac
ttcctgattcagcacattcggcagagcttcagccaagggatctcagacagcatgagccac
ggaaatgtgttcacctgggcaaatacctctcttctcagcaacctcttcggagagtgccca
ggtttcatcacagatgggaactccaaactggttggtaatgcccgtcttcgccaggtgagg
gtgcagaagaattcctgccgaatggcccgctccatgcgtcaggctgtacctgattgccat
gctccatactcatgggaggtggaggacatgggctcctatgggccaggctggaaccgctct
gcgggtgaaaacacctcaaagaccctccgcagcccctggcagtaccaaacccaggcccga
ctcagagctcaacccatctggggcagtgtggttctctacaggggaggggggtttgtggtg
gacctgggccctgactcacagaatgctagcagtacccttcagtatctgtttgacaacacc
tggcttgatatgttcacccgagcagtctttgtagagttcacagtgtacaatgccaatgtc
aacctcttctgcattgtcacactcatgctggagaccacagctgtaggagcgttccagttt
cgcagtgagctgcagagtgtccgactataccagtccaccggtggactccacatctttgtc
atggcctctgaggtcatctatttcctctttatcttctactacatgtatgttcagggaaag
ctgatgaagcagcagaagtgggcttacttcaagacaaagtggaacctgctggagctcgcc
atcatcctcctgagctggagcgcactgtctgtcttcattaagaggagcctgctagggaac
cgggacatggagtactaccacaaccataaagaccagtttgccagtttccatgagacagcc
acagcagatgcagtgctggggtatctgattgcattcctggtgctactggctacagtcaaa
ctgtggcacctgatgaggttcaaccccaagctacacatgatcacagccacactgcaacgt
gcctggactgacatatcaggcttcatactggtcatcaccattatgttcctggcctatgct
atgatttctaatctgatgtatggctggaagctgtactcatataggactctcctggattct
gctctgaccatggtcagcttgcaactgggcatcttcaactatgacgaggttcttgattac
aacccggtgcttggagcgttcctcattggctcctgcattatattcatgacctttgtggtt
ctgaacctgttcatctcagtcatcctggtggcgttcactcaagagcaaatgcatcacaag
ccctcagaggaggaggagatagtggatctgatgctgatgaagttctgcagcttgttcggg
atcaaatataagaaagaagaaagtaacagtcccaaggtgattgccaaccatgcctctgtt
actaagcaagaaccctccactatatcctcagagatgcttagttctcagtaa
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