Oncorhynchus tshawytscha (Chinook salmon): 112264312
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Entry
112264312 CDS
T05605
Symbol
ddx39b
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112264312 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
112264312 (ddx39b)
03015 mRNA surveillance pathway
112264312 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112264312 (ddx39b)
03041 Spliceosome [BR:
otw03041
]
112264312 (ddx39b)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112264312 (ddx39b)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112264312 (ddx39b)
Spliceosome [BR:
otw03041
]
Complex C
Other components
EJC/TREX
112264312 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112264312 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112264312
NCBI-ProteinID:
XP_042151057
LinkDB
All DBs
Position
LG13:8803646..8823494
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AA seq
428 aa
AA seq
DB search
MTEQDVENELLDYEEDDVVGDLSGGDILSIKKERVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDEEVLKKECPHVVVGTPGRTLALI
RNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEILRLXPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
VALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNINELPDEIDI
SSYIEPTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcaggatgtggagaatgagctcttggactacgaagaggatgatgtggtggga
gatctatcaggaggggatattctgtccattaaaaaggagcgtgtgaagggctcctatgtg
tccatccattcgtctgggtttagagacttcctgttgaagcctgagctactgagggcgata
gtggactgtggctttgagcatccctctgaggttcaacatgaatgcatccctcaggccatc
ctgggtatggatgtgctgtgccaggctaagtctggtatgggcaagacggccgtgtttgtc
ctggccaccctacagcagctggagcctgtcactggacaagtgtccgtgctggtgatgtgt
cacacccgagagctggcatttcagatcagcaaagagtacgagagattctccaaatacatg
ccgactatcaaggtggcagtgttcttcggtggcctgtctataaagaaggacgaagaggtg
ttgaagaaggagtgtccccatgtggtggtggggacgccggggcgaaccctggccctgatc
cgcaacaagaccctcaacctgcgacacatcaaacacttcatcctggacgagtgtgacaaa
atgttggaacaactcgacatgcgcagagacgtccaggagatactccgtctgnacccccat
gagaaacaggtcatgatgttcagcgccaccctgagcaaagagattcgccccgtctgccga
aagttcatgcaagatccgatggaaatctttgttgatgatgagaccaagctgactctccac
ggactgcagcagtactacgtcaaactgaaggacaacgagaagaacaggaagctctttgat
ctcctcgacgtgctggaattcaaccaggtggtgatctttgtgaagtccgtgcagcgctgt
gtggctctggcccagcttttggttgagcagaacttcccagctattgccatccaccgcggg
atgcctcaggaggaacgtctctctcgttaccaacagtttaaagatttccagagacgtatc
ctggtggccaccaacctgtttggcagagggatggacatcgagagggtcaacatcgccttc
aactacgacatgccggaggactctgacacgtacctgcacagggttgccagggcgggcagg
tttggcaccaaaggcctggccatcacatttgtgtctgatgagacggatgcccgtactctt
aacgacgtccaggaccgattcgaggtgaacatcaatgagctgcccgacgagatagacatc
tcatcttacattgaaccaacccggtaa
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