Oncorhynchus tshawytscha (Chinook salmon): 112264452
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Entry
112264452 CDS
T05605
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112264452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112264452
03036 Chromosome and associated proteins [BR:
otw03036
]
112264452
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112264452
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112264452
PBAF complex
112264452
GBAF(ncBAF) complex
112264452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Omp_AT
DUF919
Motif
Other DBs
NCBI-GeneID:
112264452
NCBI-ProteinID:
XP_042151253
LinkDB
All DBs
Position
LG13:complement(21553315..21581685)
Genome browser
AA seq
956 aa
AA seq
DB search
MATTSGGPNIGTPGTSQSPHTTTAQRKKDGNPSARYWESHDSLVQLETVRQWIGKHYKKY
VQADSPSCQALASLTLQMLQFQEEVFGRRAEIRTHTKLPSQCFLDLRPGGGLCHILGTAY
KFKTDQGWRRFDLQNSSRTDRNVEMFTILEKTLVQNSCLSRPVVYVDQEVDQNLNSRLAD
IITKHQGSLTEDRTQASHHIYPRPAVTDQDWEWVRPVMRKDNYVLVHWGRHPDSYDSWLS
TSDVEGEVQEPPHTHRPWRVHAGWVLDTEVYNEWMNEEDYLVDDRNVPLILRRRVHVTDQ
QDRKFTPLKKRRRSPSPPSSDGKKKGGKKSGGFKRRGPKEEEEDVEEDLTKDMEDPTPVP
NMEEIILPKNVNPKKDSENTPVKGGMMTDLDEIEDDSLLPGGREDEEGREGLRLSDGEDN
ITEQTHHIIVPSYTAWFNYNCIHQIEKRALPEFFNGQNKSKSPEIYLAYRNFMIDSYRLN
PQEYLSSTSCRRNLTGDVCAVMRVHALLEQWGLVNYQVDAESRPLPMGPPPTPHFNTLAD
TPSGLAPLQHRPLQVSSSQQMLFFPERSVEKPSDSQNFGLRTDLYARKHPKSKGASSGRD
WTEQETLLLLEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSASSLGPLA
YQPVPFSQSENPVMSTVAFLASVVDPRVASAAAKAALEEFCRVREEADKVLEFPALNEAE
KADVMDSEKMETETGSQQSLQADRQTVLEPSGGERSVEGERVKRENAEMTVTEERDCDSG
GNRESDRGEKEEIAGRWREVEQDEGRRLAELELVDGTVTTAAAAALGAAATKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQSFHSEQLK
HAEMKILQQREQQAPYTPQQHTGQSMPSQMMPSGETLSPWPPTPWSSQRHVPTTTA
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaacgtctgggggacccaacatcgggactcccgggaccagccagagtccacac
accaccaccgcacaacggaaaaaagacgggaatccgtccgcgaggtactgggagagccac
gactccctggttcagctcgagacggtgcgacagtggattgggaagcactacaaaaagtat
gtgcaggcagattctccatcctgccaggctctagcctccctcacccttcagatgcttcag
ttccaggaggaagtgttcggcagacgggctgaaatccgcacacacaccaaactaccttct
cagtgcttcctggacctgcgcccaggaggcgggctttgccacatccttggcactgcatac
aagttcaagactgatcagggctggagaaggtttgacctacagaactcctccaggacagac
cgaaacgtagagatgtttactattctggagaagaccctggtccagaatagctgtctgtcg
aggcccgtcgtgtatgtggaccaggaggtggatcagaacctgaacagcagactggctgac
atcatcaccaaacaccagggttcgttgactgaggacagaacccaagcctctcaccacatc
tacccccgtccagctgtcacagaccaagattgggagtgggtgcgccctgttatgcggaag
gacaactatgtgttggtgcactggggcaggcaccctgacagctacgatagctggctgtcc
accagtgacgtagagggagaggtgcaggaacctccacacacacacagaccttggagggtg
catgcaggctgggtgttggatacggaggtgtataatgagtggatgaatgaagaagactac
ctggtagatgacagaaacgttcccctcatcctccgccggagagtccacgtcacggaccaa
caggaccgtaagtttactccactgaagaagagaagacgctccccctctcctccctcttcc
gatggcaaaaagaaaggaggaaagaagagtggcgggtttaagaggcgtgggccaaaggag
gaagaggaagacgtagaggaggatctgactaaagatatggaggatccaacacctgtccct
aatatggaagaaattatactgcctaagaatgtgaacccaaagaaggacagtgagaacact
cctgtcaaaggagggatgatgaccgacctggatgaaattgaggatgactctctgcttcct
ggtggaagggaggatgaggagggcagagaggggctgcgtctgtcagatggagaagacaac
atcacagaacaaactcaccacatcatcgttccgtcctacaccgcctggttcaactataac
tgtattcaccagatcgagaaacgagctcttccagagttctttaacggacagaacaagtcc
aaatctccagagatatacctggcatatcgtaacttcatgattgactcgtaccggctgaac
ccccaggagtacctcagctccacctcctgcagacggaacctgacaggagacgtctgcgcc
gtcatgagggtccatgcgttgttggagcagtgggggttagtgaactaccaggtggatgca
gaaagcagacctctccctatgggaccccctcccacccctcacttcaacacactggctgat
acaccctcaggactggccccgctgcagcacagaccactacaggtgtcgtcctcccagcag
atgttgttcttccctgagagaagtgtagagaagccctcagactctcagaactttggcctc
agaacagacctgtatgccaggaaacaccccaagagtaaaggagccagttcagggagggat
tggacagaacaggagaccctcctactgttggaggcgttagaggtctatagagacgactgg
aacaaggtgtcagaacacgtggggtctcgtacccaggatgagtgcatcctccacttcctg
cgcctgccaatagaagacccgtatctagaggactccgcctcctctcttggcccattggcc
taccagcccgttcctttcagccaatcagagaatccggtgatgagcaccgtggcattcttg
gcgtccgtggttgatccccgagttgcctccgccgctgccaaggctgctttggaggagttt
tgtcgtgtgcgtgaggaagctgacaaggttctggagttccctgcacttaatgaggctgag
aaggcagatgtgatggatagtgagaagatggagactgagactggctcccagcagtctctg
caggcggatagacagacggttctagagcccagtggaggagagagatcagtggagggagaa
cgagttaagagagagaatgctgaaatgacagtcacagaggagagagactgcgatagcgga
gggaaccgcgagtcagaccgaggggagaaggaggagattgcgggacgatggagagaagta
gagcaggatgaagggaggagactagcagagctggagttggtagatgggaccgttaccacg
gcagcagctgctgctctaggcgccgctgctactaaggccaagcacctagcagcagtagag
gagaggaagatcaagtctctggtggctctgctggtggagactcagatgaagaagctggag
atcaaactgagacactttgaggagctggagaccatcatggaccgagagaaagaggctttg
gagcaacagcgtcagcagctgttgtcagagcgacagagtttccactctgagcagctgaaa
catgcagagatgaagattctacagcagagagagcagcaagcaccatacactccacaacaa
cacacaggccagtccatgcccagccagatgatgcctagtggggaaactctctcaccatgg
cccccgacaccctggagctcccaacggcatgtacccaccaccacagcctga
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