Oncorhynchus tshawytscha (Chinook salmon): 112264465
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Entry
112264465 CDS
T05605
Name
(RefSeq) sorting nexin-13-like isoform X1
KO
K17925
sorting nexin-13
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112264465
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
112264465
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PXA
Nexin_C
RGS
PX
Rep3_C
DUF6395
Motif
Other DBs
NCBI-GeneID:
112264465
NCBI-ProteinID:
XP_042151271
LinkDB
All DBs
Position
LG13:21888304..21922673
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AA seq
1013 aa
AA seq
DB search
MSNDVANRRISSAQLIQASLSVWGWGGLGVVLFLITFGPFAIFYLAFYICCVVGGGFAVT
LLFGKTNSERHLEKCEHSYLPATQTGILKTLDEMRLEQKPIKIDRRLTGSNYIDEPLQQV
IQFALRDYIQYWYYTLSEDESFLLEIRQTVQNALVQFSTRSKEVDWQPYFTTRLVDDFAT
HLRVFRKAQDRLERRDDNKQRDLSEEMVESFFEAEVEMERSVCRDVVCTSLKDEEGFLRD
LCEVLLYLLLPPGDFHNKNMRYFLREILARGVLLPLVNQLSDPDYINQFVIWMIRDSSCN
YEAFMNILKLTDKVSELEAVKDKALEELQYLRSLDTAGDDINVIKNQINSLLFVKKVCET
RIQRLQSGKEVDTLKLAANLGKLCIIPLEHVLVHNIALQFFMDYMQAAGAQAELFFWLTV
EGYRVTAQQQLEVMEGWQKDGKKGGSTQGLLKAAALGVYEQYLSDKASPRVQVDEVSVVK
LREKLQKEGDPTPEIFDEIQRKVYDMMLRDERYYPSFRQSPLYIRMLAELDMLKEPSYRG
SDDGDGESFNGSPTGSINLSLDDLSNSCHDDNIQLHAFISDTDMCGYNSSGLKNVTLSKC
LDAVRSLDAVLSPNITRRQSRVCNDHGKTYALYAITVCRRNHDGSEDSWKTYRRYSDFHD
FHMRITEQVKFENLMSILKLPGKKTFNNMDRDFLEKRKKDLNAYLQLLLNPEMMKACPTL
VHYVYDFLENKQYSKGKGDFARKMDTFVNPLRSSMRNVSNAVKRLPDSLAEGMNTAADNM
GRMSEKLGQDIKQSMFKVPPLLPKSDVDPEHCRVSAQLDDNVCVFQVDDNIPLRVMLLLM
DEVFDLKERNQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDFMTAPEQVADYVKKFRDS
YWPNGILAESPPRRDKNIRMRTRVAAKTNLLGIMPDELKHIIGADTTRKGILRVFDMFQH
GPMNRRLVYVLLEGFLETMFPQYKFPELFVKLHSRSPRTARYTQKLKSTSLKR
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacgacgttgctaacaggagaatctcttcagctcaactgattcaggccagtctg
tctgtgtggggatgggggggtctaggagtggtgctgttcctcatcacttttggacccttc
gctatcttctacctggccttctatatctgctgcgttgtaggcggtggttttgcggtcact
ctgttgtttgggaagaccaactcagagagacatcttgagaagtgtgaacactcctacctg
ccagccacgcaaacgggtatactgaagacgttggatgagatgaggttggagcagaagcct
ataaagatagacaggagactgactggctccaactacatagacgagcctctgcaacaggtc
atccagtttgcattgagagattatattcagtattggtattacactctgagtgaggatgag
tctttcctgctggaaatcagacagactgtccagaacgctttggtccagttctctacacgg
tctaaagaggtggactggcagccttatttcaccaccagactggtggatgacttcgctact
cacctccgagtcttcagaaaggcccaggacagactggagcgcagggatgacaataaacag
agggacttgtcggaggagatggtggagtcattctttgaggcggaggtagaaatggagagg
agcgtctgcagagacgtggtctgcacctccctgaaggatgaagaagggttcctgagggac
ttgtgtgaggtgctgctctaccttttactacctcctggagacttccacaacaagaacatg
agatacttcctcagggagattctggcgcgaggcgttctccttcctctggtcaaccagctg
agtgatcctgattacatcaaccagtttgttatctggatgatccgggactctagctgtaac
tacgaggcgtttatgaacatcttgaagctgacagacaaagtgtctgagctggaggctgtt
aaagacaaggccctggaggaactacagtacctacggtcactggacaccgcaggagatgat
atcaatgttataaagaatcagatcaacagtctgttgtttgtgaagaaggtctgtgagacc
aggatacagaggctacagtcagggaaggaagtggatactctgaaactagcagctaatttg
ggcaagctgtgcatcatcccactggaacacgtccttgttcacaacatcgccttgcaattc
tttatggactacatgcaggcggctggggcccaggcagagctgttcttctggctgacagtg
gagggctacagagtaacagcccagcaacaactagaggtgatggagggatggcagaaggat
ggaaagaagggaggttccactcaaggactgctgaaggctgcagcattaggggtctatgaa
cagtacctgtctgataaggcgtcccccagggtgcaagtagatgaggtgtctgtagtcaaa
ctaagagagaagctacagaaggaaggagaccccacgccagagatattcgacgagatccag
agaaaagtgtatgacatgatgcttcgtgatgagaggtactacccgtcgttcagacagagt
cccctctacatcaggatgttagctgaactggacatgctcaaagaaccgtcttatagagga
tcagatgacggagatggagaatcgttcaacggttctccaacaggaagcattaatctatct
ctggatgacctttcgaattcctgccatgacgacaatatacagctacacgccttcatctct
gacacagatatgtgtgggtacaacagtagtggccttaaaaacgttaccctgtcaaaatgc
cttgatgctgtaagaagcctagatgcagtgttgtctcctaacattacaagacggcagtcc
agggtgtgtaatgaccacggcaagacctacgccctctacgccatcaccgtgtgccgccgt
aatcacgatggcagcgaggactcctggaaaacctaccgtcgctactccgacttccacgac
ttccatatgaggatcacggagcaggtaaagtttgagaacttgatgtcgatactgaagctg
ccagggaagaagacgttcaacaacatggacagagacttcctggagaagaggaaaaaagat
ctcaacgcatacctacagctgctgctgaatccagagatgatgaaggcctgtcctactctg
gttcactatgtctatgacttcctggagaataagcaatacagcaagggcaagggagacttc
gcacgcaagatggatacgtttgtgaacccgctgcgtagctcgatgcgtaacgtgtccaac
gcagtgaagagactgccagatagtctggctgaagggatgaacactgctgctgacaacatg
ggacgtatgtcagagaaactgggccaggacatcaaacagtccatgttcaaggtgcctcca
ctgctccccaagtctgacgttgacccagagcactgccgagtctcagcccagctggacgac
aacgtgtgtgttttccaggtggatgataacatccccctgcgtgtgatgctgctgctgatg
gatgaggtgtttgacctgaaggagaggaaccagtggcttcgcaggaacatcaagaacctt
ctgcagcaactcatcagagccacatacggagacactatcaacaggaagatcgttgatcat
gtggacttcatgacagctccagaacaggtggcagactacgtcaagaagttcagagattca
tactggcccaacggaatcctagcagagtctccgccccgccgggacaagaacatccgcatg
aggacacgggtcgccgccaagaccaacctattgggaatcatgccagatgagttgaagcac
atcataggggcggatacgactcgtaaaggcatccttcgtgtgtttgacatgttccaacac
ggaccaatgaatcgtcggctggtctacgtgctcctagaaggattcctggagaccatgttc
cctcagtacaagttcccagagctgtttgtcaaactgcattcccgttcgccgcgcacagcc
agatatacacagaaactcaagagcacctccctgaagaggtga
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