Oncorhynchus tshawytscha (Chinook salmon): 112264483
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Entry
112264483 CDS
T05605
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250
Viral life cycle - HIV-1
otw03272
Virion - Hepatitis viruses
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112264483
03272 Virion - Hepatitis viruses
112264483
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112264483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112264483
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112264483
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
112264483
Exosome [BR:
otw04147
]
Exosomal proteins
Proteins found in most exosomes
112264483
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
AAT
COG3_N
Snapin_Pallidin
Motif
Other DBs
NCBI-GeneID:
112264483
NCBI-ProteinID:
XP_024296877
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All DBs
Position
LG13:22491428..22516800
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AA seq
885 aa
AA seq
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MATFISVPLKKSSEVELVKPLSKFVTATYPTGEDQAEYIRSVEELNKLRKSALGRPLDKH
ESSLEILLRYYDQLCAVEPKFPFSENQLCLTFTWKDAFDKGSLFGGSVKLALASLGYEKT
CVLFNGAALASQIASEQNLDSDEGLKAAAKYYQLASGAFGHIKDTVLSALNREPTMDISP
ETVGTLSLIMLAQAQEVFFLKATSDKMKDAIIAKLANQAADFYSDAFKQCQYKENLPKCI
YFQEVLPVLAAKHCIMQANAELHQSILAKQKKHFGEEIARLQHASELVKTVASRYDEYVS
VKDLSDKISRALTAAKKDNDFIYHDRVPEVKDLEHIGKAALVKATTITPPLSAKFTDLFE
KMVPMAVQQSMSVYSQRKAETVNRLVGTMREATNLCNGVLASLNLPAALEDLSGDSIPQS
IIEKAHAIVQQGGLQSIEQLIRDLPELLTRNREILDESLKMLDDEESTDSELRSKFSQRW
NRTPSGDLYKPLRAEGGNFRSVLDKAVQADQVVRERYNAHCEMIALLCKPEAELTAAIPS
ANPAKTLQGSEVVSVLRSQLSQLELVKREREVLETEIKGVTFDMSSSFLTALAQDGAINE
EALSMSQLDQSYGSYSQRVQASLRSQEELLGNVQASHQEFSSLKQSNSEANDREEVLKKL
ASAHDSYVEITSNLREGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKDLQQSIARE
PSAPSFSVPAYQTNPTATGPTPAPRTVFQPQQPQAKAQPPERPPPPAFTPQAASAPGNPP
SNQPQPVNPPPMAPPSQAQGPPYPTYQGYPGYAYQMPMGYNPYAAYSQYNMPPTMQPNMQ
PYVPYQQAPAPGQGGYPGVPPTQQHPYTYQQQPQQPPPQPYYPQQ
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttttatttctgtcccgttaaagaagtcgtctgaagtcgaactagttaaaccg
ctctcgaaattcgttacggcgacatacccaacgggcgaggatcaagctgagtatatccga
tccgtggaggagttgaacaagctgcgcaagagtgctctggggaggccgctcgacaaacac
gaaagctcgctggaaatcctcctgaggtattatgatcagctgtgtgccgtggagccaaag
tttcccttctctgaaaaccagctgtgtctaaccttcacatggaaagatgcctttgataag
ggctcactgttcgggggctcagtcaaactagccctggccagtctgggctatgagaagaca
tgtgtgttgttcaatggagcagcgttggcaagtcagatcgcttcagaacaaaacctggac
agcgatgaaggactgaaggccgcagccaaatactaccagttggcaagtggagcatttggt
cacattaaggacacagtgctgtcggctctgaacagagagcctacaatggacatttctcct
gagaccgtaggaaccctcagtctcatcatgctggctcaggcacaggaagtcttctttctc
aaggctacttcagataagatgaaggacgccatcatcgctaaactggccaatcaggcggca
gatttctacagcgatgccttcaagcagtgtcagtacaaagagaacctgcccaagtgtatt
tatttccaggaggtgttgccggtgctggcagctaaacactgcatcatgcaggccaacgct
gagctacatcagtctatcctcgccaagcagaagaaacactttggggaggagatcgctcgc
ctgcagcatgcttcagagctggtgaagacggtagcatctcgctatgatgaatacgtcagt
gtgaaagaccttagtgataagatcagccgtgctctgaccgcagctaagaaggacaacgac
ttcatctaccacgaccgcgtccctgaggtcaaagacctggaacacatcggcaaggcagcg
ctggtcaaggctaccaccatcacacctccgctcagcgccaagttcactgacttgtttgag
aagatggtgcccatggctgtgcagcagagtatgagtgtgtacagccagaggaaggctgag
accgtcaacagactggtaggaaccatgagggaagctactaacctctgcaacggtgtcctg
gcatctctgaacctgcctgcggctctggaggacctgtctggagattctatcccacaatcc
attattgaaaaggcccatgccatcgtccagcagggggggctgcagagcatagagcagctg
atcagagacctgccggaactactgacacgcaacagagagatcctggatgagtctctgaag
atgctggatgatgaggagtcgacagacagcgagctgagatccaagttcagccaacgctgg
aacagaactccctctggagacctctacaaaccactcagagcggaggggggtaacttccgt
agcgtgttggacaaggcagtgcaggctgaccaggtggtcagagagcgttataatgcacac
tgtgagatgatcgccctcctctgtaaacctgaggctgaactcaccgctgctataccttca
gccaaccctgctaagacattgcagggcagcgaggttgtgagtgtgttgcgttcccagctg
tcccagctagagttggtgaagagagagagggaggtgctggagacggagattaagggcgtg
acctttgacatgtcctccagcttcctgacagctctggctcaggacggggccatcaatgag
gaggcactgtcaatgagccagctggaccaatcatacggcagctacagccagagggttcaa
gccagcctccgctctcaggaagagctgttgggcaacgtgcaggcatctcaccaggagttc
tccagtctgaagcagtccaactcggaggctaatgatcgtgaggaggtgttgaagaagctg
gcctcggcccacgacagctacgttgagatcaccagcaacctcagagagggcaccaaattc
tacaatgacctcaccgagatcctgctgaagttccagaacaagtgcagtgacatcgtcttc
gcccgcaagacagaacgggatgaactgctgaaggatttgcagcagagcatcgccagggag
cccagtgccccgtccttctctgtccccgcctaccagactaaccccaccgccactggacca
acccccgcaccaaggactgtcttccagcctcagcagccccaggcgaaggcccagcctccc
gagcggccccctccccctgccttcaccccccaggccgcctccgcaccaggcaaccctccc
agtaaccagcctcaaccagtaaaccccccacctatggcccctccctcacaggcccaggga
ccgccttaccccacataccagggataccccgggtatgcctaccagatgcctatgggttat
aacccgtatgcagcgtacagccagtacaacatgccccccactatgcagcctaacatgcag
ccctacgtcccctatcagcaggccccagcacccggacaggggggctaccctggggtcccc
cccacacagcagcacccctacacctaccaacaacagccccagcaaccaccaccacagcca
tactacccacaacaataa
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