Oncorhynchus tshawytscha (Chinook salmon): 112264679
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Entry
112264679 CDS
T05605
Name
(RefSeq) thrombospondin-3b-like isoform X2
KO
K04659
thrombospondin 2/3/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112264679
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112264679
09144 Cellular community - eukaryotes
04510 Focal adhesion
112264679
09142 Cell motility
04820 Cytoskeleton in muscle cells
112264679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112264679
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112264679
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112264679
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112264679
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112264679
Exosomal proteins of colorectal cancer cells
112264679
Exosomal proteins of bladder cancer cells
112264679
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112264679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
cEGF
EGF_3
Motif
Other DBs
NCBI-GeneID:
112264679
NCBI-ProteinID:
XP_024297214
LinkDB
All DBs
Position
LG13:complement(30948336..30972999)
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AA seq
947 aa
AA seq
DB search
MDMGRLMQNVLLVSASLLLGFSRSSEMQVIDMLELHDAKQSASAVGKMSGALGFVSDLYL
VSTLRLPPKLGGVLLGVYNKDDNRKYLEVALMGKVNKVLVRYVREDGKLHTVNLQNPGLS
DGRTQSLILHVGGLRRNYLHMELYVNCRLADSAQALPSFVQLPSEAESVEIRNGQKAYAR
LQGSVDSLKMALGGSIANAGILTDCPFQAGADVNAILGDHTKALIGQLIIFNQILGELRE
DIREQVKEMSLIRNTILECQACGFHEPHSRCEPNLCYKGVPCTETREYPGYRCGACPEGM
MGNGTHCQDIDECAVARPCFSSEGCVNTAKGFTCESCPVGFSGSLLSGVGVEFAKSHKQE
CTDVDECADLSNTCIPNSVCTNTEGSFRCGLCKESFVGNQTVGCFLRRSCATLGFNPCDV
NGHCVIKGAAKVSCKCNMGWAGNGYTCGPDTDSDGYPDQPLPCIDNDYHCRADNCVNTPN
SGQEDADGDGIGDQCDEDADGDGIQNVEDNCRLVPNKDQQNSDTDSYGDACDNCPNVPNG
SQMDTDGNGAGDTCDNDIDGDGIPNVLDNCPKMPNPMQTDRDGDGVGDACDSCPEVNDPL
QSDMDNDLVGDVCDTNQDMDGDGHQDSRDNCPDVPNSSQLDSDNDGIGDECDDDDDNDGI
PDAGPPGPDNCRLIPNPSQTDTDRNGIGDMCENDFDNDSVIDLIDVCPESAEVTMTDFRA
YQTVILDQEGEAQIDPNWIVLNRGMEIVQTMNSDPGLAIGITAFNGVDFEGTFHINTATD
DDYVGFIFSYQDSSSFYVVMWKQMEQTYWQSLPFRAMAQPGLQLKAVKSRTGPGEYLRNA
LWHTGDTPGEVTLLWKDPRNVGWRDKTSYRWHLSHRPQVGYIRVRLYEGMTLVADSGVVV
DTSMRGGRLGVFCFSQEQIIWSNLGYRCNDTVPEDYEFYRKQMHIRV
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggatatggggaggcttatgcaaaatgttctacttgtgagcgcgtcgcttctcttgggc
ttcagcaggtcttcagaaatgcaagtgattgacatgctggagctgcacgacgccaagcag
agtgcgtccgcggtgggaaagatgtcgggggctctgggcttcgtgtcggatttgtacctg
gtgtccactctgcgattgccgcccaaactgggaggagtgctgctgggcgtctacaacaaa
gacgacaacaggaagtacctggaggtggccctcatgggcaaggtcaacaaagttctggtg
cgctatgtacgtgaggacggtaaactccacacagtgaacctccagaaccccggcctctcc
gacggacgcacccagtcactcatcctccacgtgggtgggctccgacgaaactacctccac
atggaactctatgttaactgccgattggccgactcagcacaggccctgccgtcatttgtc
cagctcccatcagaggcggagtctgtggagatacgaaatgggcagaaggcctatgccagg
ctacagggctcagtggactctctgaaaatggctctgggtggctccatagccaatgcagga
atcttgaccgattgtccatttcaggctggtgccgatgtcaatgccattctgggtgaccat
accaaggctttgattggccagctgatcatcttcaaccagatcctgggtgaactccgagag
gacatcagggaacaggtgaaggagatgtctctgattaggaacaccattctggagtgccaa
gcgtgtggcttccacgagccccactctcgctgcgagcccaacctctgctataagggcgtt
ccctgtacagagacccgggagtacccaggctaccgttgtggtgcctgcccagaaggcatg
atggggaatggcacccactgccaggacattgacgagtgtgccgtagcccggccctgtttc
tcgtccgaggggtgcgtaaacacggccaagggcttcacctgtgaatcctgtcccgtcggc
ttctcaggatccctcctcagtggggttggggtggagtttgccaagagccacaagcaggag
tgcacagatgtggatgagtgtgctgacctctccaacacctgcatccccaactctgtctgc
accaacacagagggctcgttcaggtgtggtctgtgtaaggagagctttgtgggcaaccag
acggtgggctgtttcctgcggaggtcctgcgccacgctgggcttcaacccctgcgacgtc
aacggccactgtgtcataaagggtgctgccaaggtctcctgcaagtgtaatatgggctgg
gcaggaaatgggtatacgtgtggtccagacacagacagcgatggctaccccgaccagcct
ctcccctgcatagacaatgactatcactgtcgagctgacaattgtgtgaacacacccaac
tctggccaggaagacgcagacggagacggtataggtgaccagtgtgacgaagatgcggac
ggagacggaatccagaacgtggaggacaactgccgtctggtccccaacaaggaccaacag
aactctgatacagactcatatggggatgcgtgtgacaactgccccaatgttcccaatggc
agccagatggacaccgacggaaacggggctggagacacctgtgacaatgacattgatggg
gatggtatcccaaacgtgctggacaactgtcccaagatgcccaaccctatgcagacggac
cgtgacggggatggagtgggagacgcatgtgacagctgcccagaagtcaacgaccccttg
cagtctgacatggacaatgacctggtgggagatgtgtgtgacaccaaccaggatatggat
ggggacggccaccaggactccagggacaactgtccagacgtccctaacagctctcagctg
gactcagacaacgacggcatcggcgacgaatgcgacgatgacgacgacaacgatggcatt
ccagatgctggacctcccgggccggataactgccggctcatccccaaccccagccagaca
gacactgacagaaatggcattggtgacatgtgcgagaatgactttgacaatgactcagtg
atagacttgattgacgtgtgtccagagagcgctgaggtcacaatgaccgacttcagagcc
tatcagacggtcatcctggaccaggagggcgaagcccaaatcgaccccaactggatagtg
ctcaatcggggtatggaaattgttcaaaccatgaacagtgaccctggtttggccataggc
atcacagcctttaacggggtagactttgaggggacgttccacatcaacacggccacggac
gatgactatgtgggcttcatcttcagctaccaggactcgtccagcttctacgtggtcatg
tggaaacagatggagcagacctactggcagtcgctgccttttagggccatggcccagcca
ggcctgcaactgaaggcagttaagtcacgtacgggtcccggtgaatacctccgtaatgcc
ctgtggcacacgggcgacaccccgggtgaagtcaccctgctgtggaaggaccccaggaat
gtgggctggagggacaagacatcttaccgttggcacctcagccaccgcccgcaggtgggc
tacatcagggtgaggctgtatgaaggcatgacattggtggcagactctggcgtggtggtg
gacacctcaatgaggggcgggaggctgggcgtcttctgcttctcccaggagcaaatcatc
tggtccaacctgggctatcgctgcaacgatactgtaccagaggactatgagttctaccgc
aagcagatgcacatcagggtgtga
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