Oncorhynchus tshawytscha (Chinook salmon): 112264764
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Entry
112264764 CDS
T05605
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112264764
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Others
112264764
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_VIN3
Fn3_PBP1
Fn3_ROS1
Fn3_nematode
VWA_3
Motif
Other DBs
NCBI-GeneID:
112264764
NCBI-ProteinID:
XP_024297340
LinkDB
All DBs
Position
LG13:34437466..34521350
Genome browser
AA seq
1909 aa
AA seq
DB search
MPATGLKTWVWNPLLCLALISLSPAPAPAQGQVATPRRLRFKVLSATQLHVSWKEPKGDF
ESYRFIYSTQSDAEETELEVTKKEAKVIIDFDPRQLYTVKVTAVKGAQESKPLLGTFEAQ
LSEPDVKNVQPQNVRPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRIN
FRLVRMFLENLVSAFHVEFDKTRIGLAQYSGDPRIEWHLNTFTTKEAVIDAVKNLPYKGG
NTLTGLALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVQPPARSLREAGIELFAIG
VKNADEKELKAIGSPPEETHVYNVADFSVMSSIVEGLTRTVCDRVEQLDKAIKGDTGPEV
TMAAPRDLVTSEVTARSFRVSWTHAPGTVEKYRVVFYPASGGQPEEKVVQGTVDTVVLNY
LLSLTEYQVAVFAIYASSASEALRGSTTTLALPMVNNLELFDITHNSMRARWRVAEGASG
YMILYAPLTEGDAADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQET
TLPLTPARNLRFSDVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRITTLLLR
NLTSLTEYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLKTSEVSTESFRVTWEHSAQDV
VLYRLTWTPTRGGDTKEMLVNGNRNSHLLTGLRPITEYEVSLIAVFRNEEESDAVTLTES
TVARTTTTTKATTTTTTTRATTTAVVHLGARNLLLSDHTTFSMEVSWELQDRNVRQYRVA
YVTARGDRAEETKMVPGGQNSLLLQPLLSDTEYKVTVTPVYTDGDGPGVSRMGRTLPLSA
PRNLRVSEEWYNRFRITWDTPPSPTMGYRVVYKPISALGPALETFVGEDVNTMLILNLMS
GTEYGVRVIASYTTGSSEALTGKARTLYLGVTNLNTYQVRMNSMCAQWSSHRHATLYRVV
IESLLNGHKQEARLGGGATRHCFNDLTANTQYKISVYAQLQDTEGPAVTTTERTFPVPTP
APTRPPTTTPPPTIPSTKEVCKAAKADLAFLVDGSWSIGDESFLKIIRFLYSTTGALDTI
GPDGTQVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFT
VGGGIRRGIPKVVVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPS
ERHVFFVDDLDAFQKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGR
VSGVSMEPGTFNSFPCFRLHNNSLHAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFAL
WEILNKDNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHLAIS
KTNAKAVIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDNSAPFQLQSFDIVCSTS
WASRDKCCELPGLRKEEDCPAMPRACTCTQDSKGPPGPTGPPGGPGIRGGRGDRGEPGAV
GPIGPVGDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGSPG
REGQTGTRGLPGKDGPQGRTGPPGTMGTPGAPGSPGSSGPQGSLGDQGPPGSAGNKGEKG
ERGDLQSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTIPGPPGEPGRQGGQ
GPQGEQGPAGRPGFPGSNGENGQPGARGLSGEKGDKGSPGVGVQGPRGPVGPPGPTGQGR
TGSQGPSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGNGGDPSDHHNLP
LVQLPPNVYQNYDEAGEEDPYRYDAGGYPSEYYQPNYPAPRPVEPEDPALTQGDEVLRSP
GIHRSSRSLAEEEEEEKKKEEEGREERKMVGPMRESRLRRALRRSGTHD
NT seq
5730 nt
NT seq
+upstream
nt +downstream
nt
atgccggctacaggactgaagacgtgggtatggaatcctctactctgtctggctcttatc
tctctctcacctgcaccagctccagctcagggtcaagttgccactccacgaagacttcgt
ttcaaggtcctgagcgcaacccagctgcatgtgtcatggaaagagccgaaaggagacttt
gaaagctacagatttatttatagcacacaatcagatgcagaggagactgaactagaggtg
acaaagaaggaagccaaagtgatcatagactttgaccccagacagttatacacagtcaag
gtcactgctgtgaaaggtgctcaggagagcaagccacttctaggaacatttgaggcccaa
ctttcagagcctgacgttaagaacgtacagccccagaatgtacgccccaaaaaccagaaa
gacaccagtgtcacagaggagaacaatgagatatctgaagagcagttcatgtgtaagacc
ccggccatagcggatattgtgatcctggtggacggatcatggagtatcggacggataaac
ttccgtctggtccgcatgttcctggagaatctggttagcgccttccatgtggagtttgac
aagacacggataggtctggcccagtatagtggtgatcccaggattgagtggcacctgaac
actttcaccaccaaagaagcagtcatcgacgctgtgaagaaccttccttacaaaggaggg
aacacactgacgggtcttgcattgacgtacatccttgagaacagttacaaacccgagtcc
ggatccagggccggcgttcccaaaattggaatcctgatcacagatgggaagtctcaagac
gatgtccaacccccggcgcggagtctgagagaggcgggaatagagctgtttgccattggt
gtgaagaacgccgatgagaaagagctgaaggccattggctctcctccagaggagacgcac
gtctacaacgtggctgacttcagcgtcatgagctccatcgtggagggtctaaccaggacc
gtctgcgaccgggtcgaacagcttgacaaggccatcaaaggcgacacaggcccagaagtc
accatggccgctcccagagacctggtgacctcggaagtgacggccaggagtttccgggtg
tcgtggacccacgcccctggcacggtggagaagtaccgggtggtgttctaccctgccagc
gggggccagcccgaggagaaggtggtgcagggcacagtggacacagtggtgctcaactac
ctcctctccctgactgagtaccaggtggccgtgttcgccatctacgccagctcagctagc
gaggccctccgaggcagcactaccacattggccctacccatggtgaacaacctggagctg
tttgacatcacccacaatagcatgagagcccgctggagggtcgcagagggggcttctggc
tacatgatcctctatgctccactgaccgagggagacgccgccgacgagaaggaggtgaaa
gtggctgagactgtgaacgaagtggaactggagaacctgactccagacacagagtacaca
gtgacagtgtacgccatgtacggagaggaggccagtgaccctatgaccagtcaggagacc
acgctacccctgaccccggcgcggaacctgcgcttctccgacgtcgaccacagctcggcc
aggctcacctgggaggcgacgtcgaagaaggccaacggctatcgcatcatgtatgtcaag
acaaacggagtgcagaccaatgagatggatgttggccgcatcaccaccctgttgctaagg
aacctgacgtcattgacagagtacacggtggccatctttgctatctatgacgagggccag
gcggagccccttactgacagcttcaccactaagacagtcccagagcctctgaacctaaag
accagtgaagtctccacagagagcttcagggtcacctgggaacactcagcccaagacgtg
gtcctctacagactcacctggaccccaaccagaggaggagacactaaagagatgctagtg
aatggtaacaggaacagccacctgctgactggactgaggcccatcactgagtacgaagtc
tctctgattgctgtctttagaaacgaggaggaaagcgacgccgtgaccctcacagagtca
acagtggcaagaacaacaactaccacaaaagctactacaaccacaactaccacacgagct
accaccacagcagttgtgcatctgggtgcgaggaacctcctgcttagtgatcacaccacc
ttcagcatggaggtgtcctgggagctgcaggaccgcaatgtgcgtcagtaccgcgtcgcc
tatgtcaccgccaggggcgatcgtgccgaggagacgaaaatggtccccggtggtcagaac
agcctgctgctgcagccactgctgtctgacacggagtacaaggtgacggtcaccccggtc
tacaccgacggagatggccccggtgtcagccgcatgggacgcaccttgccactgtctgct
cctaggaacctgagagtgtcggaggaatggtacaatcgcttccgtatcacctgggacaca
cccccatccccaactatgggctacagggtcgtatacaaacccatctctgctttggggcct
gctctggagacctttgtgggcgaggacgtgaacaccatgctgatcctgaacctgatgagc
ggtacagagtacggcgtcagggtcatcgcctcctacaccaccggctccagcgaggccctc
actggcaaggccaggacattatacctgggagtgaccaatctgaacacctaccaggtgagg
atgaacagcatgtgtgcccagtggagttcccaccgccacgccactctgtaccgtgtggtc
atcgagtcgttgctcaatggacataaacaggaggcaaggctgggaggaggagccacccgg
cactgcttcaatgacctgacggctaacacgcagtacaaaatcagtgtgtacgcccaactc
caggacacagaggggcctgcagtcaccaccacagagagaaccttccctgttcccaccccg
gcacccaccaggccgcccactaccacccctcctcccaccataccctcaaccaaggaagtt
tgcaaggcagccaaggcagacctggcgttcctagtggatggctcctggagcatcggggat
gaaagcttcctgaaaatcatccgcttcctgtacagcaccacaggagcccttgacaccatt
ggaccagatggcactcaggtggccattgtccagtttagtgacgatgctagaaccgagttc
aaactcaactcctacgacaacaaggagaggctactagaggccattaaccgcatctcctac
aagggagggaacaccaagacagggctagccatccggcatgtgaaagacaccatcttcacg
gtggggggagggatccggaggggcatccccaaagtagtggtggtgttgactgacgggcgc
tctcaggacgatgtcaacaaggtctccaaagagatgcagatggaagggtacattgtcttt
gccattggttttgcggatgcggactacggggagctggtgagcatcgccagcaagcccagc
gagagacacgttttctttgtggacgatttagacgccttccagaaaattgaggaaaagctg
gtcacctttgtttgtgaggctgccactgccacttgtccttcggtggcgatgagtggcagt
accttgccaggtttcaggatgatggagatgtttggcctggtggagggtctgtatggacgt
gtatcaggagtgtccatggagcctggcaccttcaacagcttcccctgctttcgactgcac
aacaactccctccacgcccagcccaccaagtttatccaccctgagggcttgccctccgat
tacaccatcaccatgctgttccgcctgctgcctgaaacccccaaagagccctttgcattg
tgggagatcctcaacaaggacaatgagcccctggtgggcgtcatcctggacaacggtggc
aagaccctcaccttcttcaaccacgactacaaaggacagtttcagactgtgaccttcgag
ggacctgaaatcaagaagctcttctacggcagtttccacaagctgcacctggctattagc
aagaccaacgccaaggctgtcatcgactgtaagctggttggggagaaggccatcaacgcg
gcgggcaacatcaccacagatggcctggaggtgctgggacgaatggtgcgctcccggggg
aagaaggacaactctgcaccgtttcaactgcagtcgtttgacatcgtctgcagcacatcc
tgggccagccgagacaagtgctgtgagcttcctggtctgaggaaggaggaggactgtcct
gccatgccccgggcctgcacctgcacacaggacagcaaaggcccccccggccccactgga
ccccctggaggtcctgggatcagaggagggagaggggaccgtggagaaccaggagctgtg
gggccgataggtccagttggggacgctggcactcctgggctgcaggggcctcctggcccc
cagggccccagcggccgcaccatcatgggccccccgggtggtccaggagagagaggtgag
aagggtgcagctggcgctccaggaatacagggcattcctgggtctcctgggtcaccaggt
cgagagggacaaacaggaacaaggggactgcctggtaaagatggaccccaggggcgaaca
ggtcctccagggactatgggcactccaggagctcccggctcaccagggtcaagtggacct
caagggtcactgggagaccaaggacctcctggttccgccggaaacaaaggagagaaggga
gaaagaggtgacctgcaatcccaggcatcggtccaagcaattgcccggcaggtctgtgag
cagctgatacagagtcacatggctcgctacagctccatcctcaaccacatccccagtgca
cccgtttcggtccgcaccattcctggacccccaggagagcccgggcggcagggcggccaa
ggaccacagggagagcaggggcccgcgggcagaccagggttccccgggtccaacggagag
aatggacaaccaggagccagaggtttgtcaggagagaagggtgacaagggaagcccaggt
gtaggagtccagggtcccagaggccccgtaggacccccaggaccaacgggtcaggggcgg
acaggtagccagggtccgtctggtcggccggggaaccctggaactcctgggcggccgggt
atccctggaccagtggggtcggctggacctcctggatactgtgaccagaactcttgcgtg
ggctacaacgtaggagagggtggcaacggtggtgacccatctgaccaccacaatcttccc
ttagtccaattgccccccaacgtctaccagaactatgacgaggcgggggaggaggacccc
tataggtacgacgcagggggctacccctccgagtactatcagcccaactacccagcgccc
cgaccagtcgagcccgaggacccagccctgactcagggcgacgaggtgctgaggtccccc
gggatccaccgctcctccaggagcctggctgaagaggaggaggaggagaagaagaaagag
gaagaggggcgggaggagaggaaaatggttggtcccatgagagagagcaggctaaggaga
gccttgaggaggtcggggacacacgactga
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