Oncorhynchus tshawytscha (Chinook salmon): 112264786
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Entry
112264786 CDS
T05605
Name
(RefSeq) antigen peptide transporter 2-like
KO
K05654
ATP-binding cassette, subfamily B (MDR/TAP), member 3 [EC:
7.4.2.14
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw02010
ABC transporters
otw04145
Phagosome
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112264786
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112264786
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112264786
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
otw02000
]
112264786
Enzymes [BR:
otw01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
112264786
Transporters [BR:
otw02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
112264786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
ABC_ATPase
Rad17
AAA_30
AAA_16
AAA_25
AAA_29
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
112264786
NCBI-ProteinID:
XP_024297398
LinkDB
All DBs
Position
LG13:complement(35042386..35046893)
Genome browser
AA seq
723 aa
AA seq
DB search
MMLRTCVFAMAVGLCIDITTLAFGASISQTGTITFDAFGNVVRLWVVAGIRLVLLLGLSL
LTLGSIKPVFKRWLAVHCFLAPVYETGRLMLYGGSPERVYGSLGLGSPSLWLLCTVAAAA
AALFWETTFPDSNGESNGKQKTQKARVLFMRVLIFYRPDILLLVGAFIFLSLAVLCEMFI
PFYTGKVIDILGTQYKWNNFLTAIILMGLYSLGSSFSAGCRGGLFMCAINSFTCRMKVKL
FGALVKQEIGFFETIKTGDITSRLSTDTTLMGRAVALNVNVLLRTLIKTVGMLSLMMSLS
WKLTLLMLMETPITGLLQSVHDNYYQRLSKEVQDSIARANEAAGETVGGIRTVRSFKTEQ
HEAGRYNDRLMDTHNRKTRRDTVMAVYLLLRRLTAVVMQVAMLYYGRLFIQRGQMSTGNL
VSFILYQSDLADNIRTLIYIFGDMLNSVGAAGKVFEYLDREPQVSTKGTLQPETLTGHVQ
FHNLSFSYPTRQERKVLQGFSLELRPGQLTALVGPSGGGKSTCVSLLERFYQPQQGEILL
DGLPLQSYQHHYLHRKIAMVGQEPVLFSGSVKDNIAYGLADCSLERVQEAARRANAHSFI
SQLEKGYDTDVGERGGQLSGGEKQRIAIARALIREPQVLILDEVTSALDTESEHMVQEAL
ASCPSQTLLVIAHRLKTIERADQIILIDQGTVQEQGTHQELMDRKGSYYKLKERLFTEDD
VPH
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttagaacgtgcgtgttcgctatggccgtaggtctatgcattgacataaccaca
ttggcttttggcgcatctatttcccaaactggaacaataacttttgatgctttcgggaat
gtggtgcgtctatgggttgtagcggggattcggttagttttactactcggtttatcgcta
ctcacactaggatcgataaaacccgtattcaagcgctggttagcggtgcactgtttcctt
gccccggtctatgagactgggcgacttatgctgtatggaggttcaccggagcgcgtttat
ggatctttgggtctggggagtccaagtttgtggctattgtgtaccgtggcagcagctgca
gcagccttattttgggagacaaccttccctgacagcaatggagaaagcaacgggaaacag
aagacgcagaaggcacgagtgctgttcatgagagtcctcatcttctacagacctgacatc
ctccttttggttggggcatttatattcctgtcactggctgtcctctgtgagatgttcatc
ccattctacactggaaaagtgattgacatcttgggtacccagtacaagtggaataacttt
ctcacagctatcatcctcatggggctttactctttgggaagctctttcagtgctggctgt
cgtggtggcctcttcatgtgtgccatcaacagcttcacctgcagaatgaaagtgaagctg
tttggggccctggtgaagcaggagattggcttctttgagacaatcaagacaggtgacatc
acgtcccggctgtccacagacaccaccctgatgggccgggcggtggccctaaatgtcaac
gtcctactgaggaccctcattaagaccgtgggtatgctgtcgctcatgatgagcctgtcc
tggaagctcactctgctcatgctgatggagacgcccatcaccggcctgttgcaaagcgtc
catgacaactattaccagaggctctctaaggaggtgcaggactctatagccagggcgaac
gaggcagcgggggaaacagttggcggaatccggaccgtacgaagcttcaaaactgagcag
catgaggctggtcgctataacgacaggttgatggacacccacaatcgcaagaccaggcgg
gacaccgtcatggcagtctacctgctcctgagaagactaacagcagtggtaatgcaggtg
gctatgctgtactatggcagactgtttatccagcgaggtcagatgagcactgggaacctg
gtctctttcatcctctaccagtctgacctggcagacaatatcaggactttgatttacatt
tttggcgacatgctgaattcagtgggggcagctggtaaggtgtttgagtacctggacaga
gagccccaggtcagcaccaaggggacactccaaccagagaccttgactggacacgtccag
ttccacaacctctccttctcctaccctacccgccaggaacgcaaagtactgcagggcttc
tctctggagctgaggccgggtcagctgactgctctggtggggccatcaggaggggggaag
agcacctgtgtcagtctgctggagaggttctaccagcctcagcagggagagatcctattg
gacggactgccactgcagagttaccagcaccactacctacacaggaagatagccatggta
ggccaggagcctgttctgttctctgggtccgtcaaggacaacattgcctacggcctggca
gactgctctctggagagggtacaggaagcggctcgcagagccaacgcccacagcttcatc
agccaactggagaagggttacgacacagatgtaggagagcggggtggtcagctgtccggc
ggtgagaagcagcgtatcgccatcgccagagctctgatcagagagccacaggtcctcatc
ctggacgaggtcaccagcgcactggacacggagagcgaacacatggtccaggaggccctg
gctagctgcccctcccagaccctgctggtgattgctcacaggctgaagaccattgagagg
gcagatcagataattctgattgaccaggggactgtacaggagcagggcactcaccaggag
ttgatggacaggaaggggagctactacaaactaaaagagagactcttcaccgaagacgac
gtgccacattga
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