Oncorhynchus tshawytscha (Chinook salmon): 112264840
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Entry
112264840 CDS
T05605
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112264840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112264840
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112264840
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112264840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
112264840
NCBI-ProteinID:
XP_024297478
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All DBs
Position
LG13:complement(36622662..36639122)
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AA seq
917 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPGSLVA
TSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPATYTTENSEDDKKRGRSTDSEISQSPVK
NGNPSSSLSSSSSSSSSSSSSSASGASSGAASSSLVSMVTIAGGGQANAGGNNNSLLGNM
GGLLSNSGSYSDATQQQLQQHHQTQQARNSILSSNASSSPSNNILLPSPSASSPAISSTA
LTPNTQPQAPSRPSPGSTLGLGLGLGLGKGGMSGSPAVSQMSGLGLSGMPASLNTMAGLL
AGSTSAPYAMAAAGSGTIGSPLAGKISSLSTSSTNSSAVGPVSGLSDRSTGLLGSVPGAV
GVSGGGLGSGQSTVQGPPLVSPSPIGGGLTPGSSLGAIGSIGGNSGSGAPSNSLGIGGGS
AAIARPPSGQKQNGSTSYSAVVADSTPDSALNIASQLQSSQPSSLISTTNQLKDSVPSLL
GSMTLPTSTPSPSYIESKPSGSSMLNGPLSYTQASESMKPQEPLSTVKSMAEQAALGSAM
EGELPPLHLTTDIFPSTTAPPGPPSAPQQPSLSEVSIPPSLGVCPLGPVPLSKDQLYQQA
MQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDSVEFYQRLSTETLFFIFY
YLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRK
KEGFTFEYRYLEDRDLQ
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagttacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagac
caaatcaagacgtgggtggcctccaacgagatcaaagacaaaaggcagctagtggagaat
cgcaaactcattgagacgcaaatggagcggttcaagatcgtggaacgagagaccaagaca
aaggcttactcgaaggaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaggaggaggtcggcaattggctaacgaatacgatagacactctgaacatgcaggtggat
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaaacgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcggatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccccgggtcgctggtggcc
acgtccccgccgggccaatcgctcctggacgacgatctcttccatcagatctccagcggc
acgcctacctccaccacttcctcctcgcccattcccgccacgtacactacggagaactct
gaagatgacaagaaaaggggacgttcgacagacagtgaaatcagtcagtcacctgtcaag
aatggcaacccctcttcgtcgttgtcttcatcgtcctcgtcctcctcgtcctcctcttca
tcatctgcctctggcgcctcctcgggagcagcctcttcctcgctggtctctatggtgacc
atcgccggaggcggccaggccaacgctgggggcaacaacaacagccttctgggcaacatg
gggggtctcctctccaactctggcagctacagcgacgctacccagcagcaacttcagcag
catcaccaaacgcagcaggccagaaactcaatcctctcctccaacgcctcctccagcccc
tcgaacaacatccttctccccagcccctccgcctcctcgcccgccatctctagcacagcc
ctcacacccaacacccagccgcaggctccgtcaaggccctctccgggctccaccttgggg
ctcgggttgggcttgggccttggtaaaggcggcatgagtgggtcaccggctgtcagtcag
atgtcgggccttggcctgtcagggatgccggcgtccttaaacaccatggccggactcctg
gcgggctccacttcggccccctacgccatggcagcagcaggctccgggaccataggaagc
ccccttgcagggaaaatcagcagcctgagcactagcagcactaactccagcgcagtggga
ccggtgagtggactcagcgacaggtccacgggccttttgggctctgtgcccggtgcagtt
ggtgtcagtggtgggggccttggctcaggacagtcgacagtccagggccctccactggtg
tcccccagtcccataggaggaggcctgacccctggaagcagcctgggagctataggaagc
attggagggaactctggatcaggagcgccaagtaacagcttgggcatcggaggaggaagc
gcggcgatcgcaaggccacccagtggacagaagcagaatggtagcactagttacagtgct
gtagtagcagacagcacaccagattctgccctcaacattgccagccaattacaaagcagc
caaccctcgtctttgatctccaccaccaatcagcttaaagacagtgtccccagcctttta
gggtccatgaccctacccaccagcactccctcgccatcctacattgagagtaaaccttca
ggcagcagtatgctcaacgggccgctctcctacacacaggcctctgaaagcatgaagccc
caggagcctctgagtactgtgaagtccatggccgaacaagcggcactgggctcagcaatg
gagggagagttgccccctctgcacctcaccacagacattttccccagcactacagcgcct
ccagggcctccctcggccccccagcagccctcgctctcggaggtcagcatccccccatcg
ctgggtgtgtgcccgctggggcccgtacccctgtccaaagaccagctgtaccagcaggcc
atgcaggagtcggcctggacgcacatgccccacccctccgactcagagcggatcaggcag
tacctgatgaggaacccgtgtcccaccctgcctttccaccaccaggtgccacccccccac
tccgactctgtggagttctaccagagactgtccacggagacactgttcttcatattctac
tacctagagggcaccaaggcccagtatctggcagccaaggccttgaagaagcagtcgtgg
cggttccacaccaagtacatgatgtggttccagaggcacgaggagcccaagaccatcaca
gatgagtttgagcaggggacgtacatttacttcgactacgagaagtggggacaacggaag
aaggaaggattcacgtttgagtacaggtaccttgaagaccgagacctccagtga
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