Oncorhynchus tshawytscha (Chinook salmon): 112265013
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Entry
112265013 CDS
T05605
Name
(RefSeq) high mobility group protein B1
KO
K10802
high mobility group protein B1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
otw04140
Autophagy - animal
otw04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112265013
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112265013
09143 Cell growth and death
04217 Necroptosis
112265013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112265013
03400 DNA repair and recombination proteins [BR:
otw03400
]
112265013
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112265013
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
112265013
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
112265013
MMR (mismatch excision repair)
Other MMR factors
112265013
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
112265013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
112265013
NCBI-ProteinID:
XP_024297766
LinkDB
All DBs
Position
LG13:46608471..46611158
Genome browser
AA seq
193 aa
AA seq
DB search
MGKDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFE
DMAKQDKVRYEREMKNYIPPNGQKKKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGLS
IGDTAKKLGVMWNSSAAEEKKPYEKKAATLKEKYDKDIASYRTNGRVDTASSAAADDEEE
DDEEDDDDEDDDE
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagatcctaggaaaccgagaggcaagatgtcgtcatatgcttacttcgtgcag
acctgcagggcagagcacaagaagaaacaccccgaagccagtgtcaacttcgctgagttc
tccaagaaatgctcagagcgatggaagcccatgtctcctaaagaaaaaggcaagtttgaa
gacatggcgaagcaagacaaggtccgctacgagagagaaatgaagaactacatcccaccc
aatggccagaaaaagaagaggttcaaggatcctaatgcccccaagagaccaccgtctgcg
ttcttcatcttctgtgctgacttccgggccaagataaagagcgagcacccaggcctgtcc
attggagacactgctaagaagctgggagtgatgtggaacagctctgcagctgaggagaag
aagccgtacgagaagaaggccgccacgctgaaggagaaatacgacaaggatatcgcctca
taccgcaccaatggtagagtggatacggcctcctccgcagctgctgacgacgaagaagag
gatgatgaggaagatgacgatgatgaggatgatgacgagtag
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integrated database retrieval system
