Oncorhynchus tshawytscha (Chinook salmon): 112265024
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Entry
112265024 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
otw04054
]
112265024
Pattern recognition receptors [BR:
otw04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
112265024
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
PRY
NOD2_WH
SPRY
LRR_6
PYRIN
DeaD_C
Motif
Other DBs
NCBI-GeneID:
112265024
NCBI-ProteinID:
XP_042150861
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All DBs
Position
LG13:complement(47054760..47071465)
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AA seq
1072 aa
AA seq
DB search
MSLSGEREEGGPASKMSLSGEREEGGPASKMSLSGEHDTKAKSPFKQERPASPVPSCVSM
KSDMSMELPIYFSEGDLSTEQRNQQERFESEILSGQSSQSHQKDLASIFSMLEENIMTFV
KNELKLFKRILSPELPEGFESQKQDKEVVDSEDEKQESSAREGALKITLHVLRKMNQVEL
ADTLENYSDDPAVIYQRELKSNLKKKCQCVFEGIAKQGNPTLLNKIYTELYITEGGTGEV
NNEHELRQIETTTRKQARLKTAIKWNDIFTPLTGQDKFIRTVLTKGVAGIGKTVSVQKYI
LDWAEGKANQDVQFLFSFRFQELNLMKENKHTFIELLNHFSMETKQSGISLYNKYKVLFI
FDGLNECRLPLDFQKNKICCDVTESTSVDVLLTNLIKGNLLPSALLWITIRPAAANKIPS
VCVDQVTEVRGFNDPQKEEYFRKRFSDEDLASRILSHIKTSRSLHIMCHIPVFCWISATV
LEHMLKYKREEMPKTLTEMYTHLVVFHTKQKNEKYLGKEETGPHWNKKSILSLGKLAFQQ
LVKGNLIFYEEDLKEAGIDVIEASVYSGLCTQLFKEECVLYQEKVYCFVHLSIQEFLAAV
YVFLSFINNENLMDKLQTKSNTFLCLFRDEPEVSFYKSAVDNALQSKTGNLDLFLRFLLG
LSLESNQKYLQGLLTKTSSSRSHEETVKYIKEKIRENLSPERSINLFHCLNELNDHSLVE
EIQSYLRTGSLSGANLSPAQWSALVFVLLTSENELDVFDLKKYSRSEEGLLMLLPVVKAS
RAVLLSGCGVPEEGCASLIHVFTKHTTSTQYVFGQLSRCQVTEEGCASLASALRSNPSHL
RELDLSYNHPGDSGVRLLSAGLENPHCRLENLNVEHGGEYTMKPGLRKYVCDLTLDPNTV
NRLLSLSEENRKVTRRREKQPYPDHPERFEGCEQVLCREGLTGCCYWEVEWSGSWAGIGV
TYKGISRRGQVKDCCLGWNDKSWSLFCYDNSYTAWHNNNPTTIDVPSSSSHRVGVYLDWP
AGTLSFYRASSDTLTHLYTFTSTFTEPLYPGFHLWYEDSSVSLCQTQHDVSL
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgagtctctctggggagagagaggagggggggcctgcctctaaaatgagtctctctggg
gagagagaggaaggaggccctgcctctaaaatgagtctctctggggaacatgacaccaaa
gctaagagcccattcaagcaggagagaccagcctcccctgtacccagctgtgtgtccatg
aagagtgacatgtctatggagctacctatatactttagcgagggagacctttctactgaa
caaagaaaccagcaggagagattcgagtcagagattctcagtggtcagtcttcccagagt
catcaaaaagacctggcctccatattcagtatgcttgaagagaatattatgacatttgtg
aagaacgagctgaagctgttcaagaggattcttagtccagaactcccagaaggctttgag
agtcagaagcaggataaggaagtggtggattctgaagatgagaagcaggagagcagtgcc
agagagggggctctgaagatcacactgcacgtcctgaggaaaatgaaccaggtggagctt
gctgacacactggagaactattcagatgatcctgctgtgatttaccaacgtgaactcaaa
tctaatctaaagaagaagtgtcaatgtgtatttgaggggatcgctaaacaaggaaaccca
acacttctcaataagatctacacagagctctacatcacagagggtggaacaggagaggtc
aataatgaacatgagctgagacagattgagacaacaaccaggaaacaagcaagactaaag
actgcaatcaaatggaacgacatcttcacacccttaactggacaagacaaatttatcaga
actgtgctgacaaagggagtcgctggcattggaaaaacagtctctgtgcagaagtacatt
ctggactgggctgaaggaaaagcaaatcaggatgtgcaatttttattttcattccgtttt
caggagctgaatttgatgaaagagaacaaacacactttcattgaacttctcaatcacttc
tcaatggaaaccaaacaatcaggaatctccctctacaacaagtacaaagttctgttcatc
tttgatggtctgaatgagtgccgactgcccctagacttccagaagaacaaaatctgttgt
gatgtcacagagtcaacctcagtggatgttctgctgacaaatctcatcaagggaaatctg
cttccctctgctctcctctggataactatcagacctgcagcagccaataagatcccttca
gtgtgtgttgaccaggtgacagaggtaagagggttcaatgacccacagaaagaggagtac
ttcaggaagagattcagtgacgaggacctggccagcagaatcctctcacacataaagaca
tcaaggagcctccacatcatgtgccacattccagtcttctgttggatttctgcaacagtc
cttgaacacatgctgaaatataagagagaagagatgcccaagactctgactgagatgtac
acacaccttgtggtgtttcacaccaaacagaagaatgaaaagtatcttgggaaagaagag
acaggtccacactggaataaaaagagcattctgtcactgggaaaactggcttttcaacag
cttgtgaagggcaatctgattttctatgaagaggacctgaaagaggctggtattgatgtc
attgaagcctcagtgtactcgggattgtgcacacagctctttaaagaggaatgtgtgctg
taccaggagaaggtgtactgctttgttcatctgagcattcaggagtttctggctgctgta
tatgtgttcctctcattcatcaacaacgagaatctaatggacaaactgcaaacaaaatcc
aatacttttctttgcttattcagagacgagcctgaagttagtttctacaagagtgctgtg
gataatgccttacaaagtaagacaggaaacctggaccttttcctccgcttccttctgggc
ctctcactggagtccaatcagaagtacttacaaggtctactgacaaagacaagcagctca
cggagccatgaagaaacagtcaagtacatcaaggagaagatcagggagaatctttctccg
gagaggagcatcaatctgttccactgtctgaatgaactgaatgaccattctctagtggag
gagatccaaagctacctgagaacaggaagtctctctggagccaacctgtcacctgcacag
tggtcagctctggtctttgtgttgctgacttcagaaaatgagctggatgtgtttgacctg
aaaaaatactccagatcagaggaaggtcttctgatgctgctgccagtggtcaaagcctcc
agagctgtcctgctgtcaggctgtggagtcccagaggaaggctgtgcttctctgatccac
gtgtttaccaaacacacaacgtccacacaatatgtgtttggacagctgtcacgctgtcaa
gtgacagaggaaggctgtgcttctctggcatcagctctgaggtcaaacccctcacacctg
agagagctggacctgagctacaatcacccaggagactcaggagtcagactgctctctgct
ggactggagaatccacactgtagactggagaatcttaatgtggaacatggcggagagtac
acaatgaaacctggacttagaaaatatgtctgtgatctcacactggacccaaacacagta
aacagactcctctctctgtctgaggagaacagaaaggtgacacgtaggagagagaagcag
ccgtatcctgatcacccagagagatttgagggctgtgaacaggtgctgtgtagagagggt
ctgactgggtgctgttactgggaggtagagtggagtgggagttgggctggtataggagtg
acatataaaggaatcagcaggagaggacaggttaaggactgttgtcttggatggaatgac
aagtcctggagtctgttctgctatgacaacagttacactgcttggcacaataataatccc
actaccatagacgtcccctcctccagctcccacagagtaggagtgtatctggactggcca
gccggcactctgtccttctatagagcctcctctgacacactgacccacctgtacacattc
acctccacattcactgagcccctctatccagggtttcatctttggtatgaagactcctca
gtgtccctgtgtcaaacacaacatgatgtttcactctaa
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