Oncorhynchus tshawytscha (Chinook salmon): 112265093
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Entry
112265093 CDS
T05605
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112265093
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
112265093
3'-5' decay
Other 3'-5' decay factors
112265093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
AAA_30
UvrD-helicase
ResIII
PAM2
AAA_22
zf_CCCH_4
PhoH
AAA_16
Mov-10_helical
zf-CCCH_4
AAA_7
AAA_5
TPR_1
Motif
Other DBs
NCBI-GeneID:
112265093
NCBI-ProteinID:
XP_042158189
LinkDB
All DBs
Position
LG02:62495474..62571887
Genome browser
AA seq
1999 aa
AA seq
DB search
MADRRAEKSCEEASGSLARREYEAAVSHCTDALLALGPPAAPSPGPPASNAPNDTVTPLR
SRALLYRIAALLQLKNYDQADEDCKHVLAEELAKGDGSFQASLRCMLLDGSLHEVAGLLS
KSLFGEPLNGIVTKDLTRLKMLLSEIEAIRSEMATEYTDDNEEEVRDGWQFRPPPRGVTS
SEEYTLCKRFLEQGLCRYGAQCTSAHSREELMEWQKRYASRLIRLKQQQESKHFTENYME
ALIEKWMNSLSPEKVLSDYLDGVNVEHSSNLSVTVTTKKSAHSWTFSLFCKPVRKLYRIA
LLYDAHRPHFSITGVSVGDAGAQRLQAAAEGCQEWTAGEEALAANNGMDHCVYTVVVGFS
TEIFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMQARQQLLMTAKRWDPSCKTIV
EFSPNETVDLDRSLLARYQIPLSADQLFTQSVLDKTLTRDNYQARLHDLLYIEEIAQYKE
VSKFNIKVNLQLVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSV
LLLPLARQEWCSQPPGVKERVYEACIEEKTKDYIFLRICKDCCEELGLIPDRELQVELQF
QLNRLPLCEMHYALDRIKDNGILFPDTSLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAI
TTPLTIPLPPVLIIGPYGTGKTFTLAQAVKHILKQDDSRVLICTHSNSAADLYIKDYLHP
YVEAGNAHARPLRVYFRNRWVKTVHPLVQQYCLISNTQYTFQMPEREDILRHRVVVVTLS
TSQYLCQLDLEPGLFSHILLDEAAQAMECETIMPFALASKSTRIVLAGDHMQLSPFVYSE
FSRERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIISYTSELFYDGKLMASGKQPS
HKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVV
SPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKE
QLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEKFISICHE
NASLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPQPAQHPHHHQHHHQHPHPQ
GHTAIKQPQQQQPQQSPPKGKGQHANHTEHFPPEGFVQPNPAVLMGNPIRAFTPPLGGTP
GGMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPSVPIQLPWPGYQNRFAMDPRI
MSHQAAMAYNLNLLQAQNRGSPIPYGGVTHPSPLGMGQQTSPDKELQADSVRNGKMDGCA
KSEQSRLQTPERKTSEMKDKQGECDPGGGRGLDSQTDGLGFPNAMLHRKDNSSQRPLNYH
LAPPNPAFAPHPVGRAFPPQYPGVSRLPFRVPTQHPGGGPAMGQPNQHHSAQLSPAYASG
NHNPSFFGGAMASHRGVPETEEEGPEEIGNSIRSQMGHQVGHHPALSQPSRVNSFGEENQ
EGGLGDGMDSLTLEALSQQARLGQWGEPGPFLQGGVAFPLPQQLAHLAQPGLARFPPQLL
ARANWRMSAGMEDEAGGPPFTRFPGLLREMPPQDQPDPRDPVEMQPPPQSRLLQYRQVQS
RSPGDPSSPSSVTSNHTGPFPPGPYPGRDPTSHELELLNNPGLHQHPGNQLYNPNAYPQQ
LGHSTTPPPQVKYLLQEAQWPHGGASVAQNHMLAQGQGFPYGLPVMAHPSRQEQVHLMQL
HHQQQQQQHQQQQQQGQGPGQEPYHPLSPRTTGATALHNVEEYEPRGPGRPLYQRRISSS
YPDEGSPANAAALAQQQPQPCPPDPQEHPHTHQHPHQHPHAPYGYPPPELWPGNGGGPGP
FQNIPCNGASTLIQHRDLLVASKALRQAAEEQMKAEAAAAVAAAQPPAHSLQHLGQFPPL
MPNSKPQQQQAAPEPGQGSGGPQNPGKPPTMSYASALRAPPKPRARPEQVKKHSDPLSLL
QELSIGSSNGSNGYYSYFK
NT seq
6000 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggagagcggagaagtcatgtgaagaagccagcggatcgttagccaggcgg
gagtacgaggcggcagtgagccactgcacagatgcgctgctggccctcggccccccggcc
gctcccagccctggaccccccgcatccaacgcccccaacgacacggttacccccctccgc
agccgcgccctgctctacaggatagctgccctgctacagctgaaaaactatgatcaagca
gatgaagactgcaaacatgttctggctgaggagctggccaagggagacgggtcatttcag
gccagcctgcgctgcatgctgttggacggcagcctgcacgaagtggccggcctcctctcc
aagtccctgtttggggagcctctgaatggcatcgtcacaaaggacttaactagattaaaa
atgcttctctcagaaattgaagccattcgtagcgagatggccacagaatatacagacgac
aacgaggaagaagtacgggatggatggcagttccgccccccgcctagaggagtcaccagc
agtgaggagtacacgctgtgtaaaaggttcctggagcagggcctgtgtcgctacggtgcc
cagtgcacgtcggcccactcccgggaggagctgatggagtggcagaagcgctacgcctcg
cgcctcatccgcctcaagcagcagcaggagagcaagcacttcaccgagaactacatggag
gcgctcatcgagaagtggatgaactctctctcccctgagaaagtgctgagtgactatttg
gatggcgtcaacgtggaacacagctccaacctctccgtaacggtcaccaccaagaaatca
gctcactcctggaccttctccttgttctgcaagcctgtgaggaagctgtaccgcatcgcc
ctgctttacgacgcccaccgaccccacttctccatcacgggcgtgtcggttggcgatgcc
ggcgcccagcggctgcaggcggcggccgagggctgccaggagtggacggcgggtgaggag
gcgctggcggccaacaacggcatggaccactgcgtctacacggtggtggtgggcttcagc
accgagatcttcggcaccttccgccagaccatcgtcttcgactttggctcggagcccgtg
ctgatgcagcgcatcatggtggacgccgcctccatagaagacctggagcacctaatgcaa
gccaggcagcagctcctgatgacggccaagcgctgggacccgtcctgcaagaccatcgtg
gagttcagccccaacgagacggtggacctggaccgcagcctgctggcccgctaccagatc
cccctgtcggccgaccagctcttcacccagtcggtgctggacaagaccctgacccgggac
aactaccaggcccgcctgcacgacctgctctacatcgaggagatcgcccagtacaaagaa
gtcagcaagttcaacatcaaagtcaacctccagctggtcaccagtttcatgctgacgggc
atctcgggtggcgccaagtacgcccagaacgggcagctcttcgcccgcttcaagctgacg
gagacgctgtcggaggacacgctggcgggccgccttgtcatgaccaaggtgaactctgtc
ttgctgctgcccctggcccgccaggagtggtgcagccagcccccgggggtcaaggagcgg
gtctacgaggcctgcatcgaggagaagaccaaggactacatcttcctgcggatatgcaag
gactgctgcgaggagctgggcttgatacctgatagggaactgcaggtggagctgcagttt
cagttgaaccgcctgcccctgtgtgagatgcactatgctctggaccgcatcaaagacaac
ggcatcctgttcccagacaccagccttacccccaccattccctggagccccaacaggcag
tgggacgagcagctggacccgcgtctcaacgccaagcagaaggaggccatcctggccatc
accacgcctctaaccatccccctgccccctgtgctcatcatcgggccctacggcacgggc
aagaccttcaccctggcacaggccgtcaagcacatcctcaagcaggacgacagcagggtc
ctcatttgcacccattccaacagtgcagctgacctgtacataaaggactaccttcatcca
tacgtagaagcgggcaacgcgcacgcaagacctctcagggtatacttcaggaaccgctgg
gtgaagactgtccacccgttggtgcagcagtactgtctgatctctaacacacagtacact
ttccagatgcccgagagagaggacatcctccggcaccgcgtggtggtggtcaccctcagc
acctcccagtacctctgccagctggacctggagccagggctcttctctcacatcctattg
gacgaggcggcccaggccatggagtgtgagaccatcatgcctttcgcgctggccagcaaa
agcacccgcatcgtgctggctggagaccacatgcagctcagtccgtttgtgtacagcgag
ttttctcgagagcggaacctgcatgtgtcgctgttggaccggctgtacgagcactaccca
gccgagttcccctgccgcatcctgctctgtgaaaactaccgctcccacgaagctatcatc
agctacacgtcagaactgttctacgatgggaagctgatggccagcgggaagcagccgtct
cacaaggacttctacccgctgaccttcttcacggcgcgcggcgaggacgtccaggagaag
aacagcacggcctactacaacaacgcagaggtgtttgagatcgtggagcgggtggaggag
atgcgtaagaagtggccggtggcgtggggcaagctggatgagggcagcatcggcgtggtg
tcgccctacgccgaccaggtattccgcatccgcgccgagctccgaaagaagaggatgcac
gaggtcagcgtggagagggtgctcaacgtccaaggtaagcagttccgggtgctcttcctg
agcactgtgcgcacacggcacacctgcaagcacaaacagacggccatcaagcggaaggag
cagctggtggaggactcgacggaggacctggactacggcttcctgtccaactacaagctg
ctcaacacggctatcactcgcgcccagtccctggtggccgtggtgggagaccccatagcg
ctctgttcggtgggccgctgcagaaagttctgggagaagttcatctccatctgccacgag
aacgccagcctgcacggcatcacctttgagcagatcaaggcccagctggaggcccttgag
ctcaagaagacctacgtgctcaacccgctggcgcccgagttcatcccccgcgccctgcgg
ccccagccggcccagcacccccatcatcaccaacaccatcaccaacacccacacccccag
ggacacacggccatcaagcagccccagcagcagcaaccgcagcagtctcccccaaagggg
aaaggtcaacatgcgaaccacacggagcacttcccacctgaaggatttgttcaacccaac
cccgcggtgttgatgggcaaccccatccgggcgttcacgccgcccttagggggcacacct
ggcggcatgggcaagtcccccagtcccgtgcagaggatagacccccacacgggtgccagc
atcctctacgtgcccgccgtctacggaggaaacatggtcatgtccatgccactgccctct
gtccccatccagctgccgtggcccggctaccagaaccgctttgccatggacccacgcatc
atgagccaccaggcggccatggcctacaacctgaacctgctgcaggcccagaaccggggc
tcgcccatcccctacggcggagtcacacacccctcccccttgggcatgggccagcagacc
agtcccgacaaggagcttcaggctgattccgtcagaaacggtaaaatggatgggtgtgca
aagtctgagcagagtcggctgcagacaccagagaggaagacctcggagatgaaggacaaa
cagggagagtgtgatccgggcggtggccggggtctggactctcagacggacggactgggc
ttccccaatgccatgctccaccgcaaggacaactcaagccaaagacccctcaattaccac
ctggcgccccccaacccggcctttgccccccatcccgtgggtcgggccttccccccacag
taccccggcgtgtccaggctcccctttagggtaccgacccagcacccaggtgggggcccg
gccatgggccagcctaaccagcatcactcggcccagctatccccagcctacgccagcggc
aaccacaacccctccttctttggtggggccatggcctcccacaggggtgtgccagagact
gaggaggaggggccggaggagattgggaattccatcaggtcccagatgggccaccaggtg
gggcaccacccggccttgtcgcagcccagccgagttaacagcttcggagaggagaaccag
gaaggaggcctgggagatgggatggactccctaactctggaggccctgagccagcaggcg
cggctgggccagtggggtgagcccgggcccttcctccagggcggtgtggccttccctctg
ccccagcagctggcccatctggcccagcccggcctagcccgcttcccccctcagctgctg
gcacgggccaactggagaatgagcgccggcatggaggacgaggctggcggaccgcctttc
actaggttcccaggcctcctaagagagatgcccccccaggatcagcctgatcccagggac
ccggttgagatgcagccccctccccagtcccgcctgctccagtaccgtcaggtccagtcc
cgctcccctggagacccctcctccccctcgtctgtaacctccaaccacaccggccccttc
ccccctggcccctatcccggccgagaccccaccagccacgagctggagctcctcaataac
ccgggtctccatcagcacccggggaaccagctctacaaccccaacgcctacccccagcag
ctgggccactccactaccccgcccccgcaggtcaagtaccttctccaggaggcccagtgg
cctcacggcggagctagcgtggcccagaaccacatgctggcccagggccagggcttcccc
tatgggctgcccgtcatggcccaccccagtagacaggagcaggtccacctcatgcagctc
caccaccagcagcagcagcagcagcaccaacagcagcagcagcagggtcaaggcccaggc
caggagccctaccaccctctctcccccagaacaacaggtgccaccgcccttcacaatgta
gaagagtatgaacccaggggtcccgggcggcccctctaccagcggcggatctcctccagc
tacccagacgagggatcccccgccaacgccgccgccttggcccagcagcagccacagccc
tgcccgccagacccccaggagcaccctcacacacaccaacacccccaccaacacccccac
gccccctacggctaccccccgcccgagctgtggcccggcaacgggggcggccccggcccg
ttccagaacattccatgcaacggagccagcacactcattcaacaccgggacctcctagta
gcttccaaggccctgcggcaggcagcagaggagcagatgaaggctgaagcagcagcagca
gtagctgcggcccagcctcccgcccactccctacagcacctcggacaattcccccctctc
atgcccaacagcaagccgcagcagcagcaggccgccccagagcccggccaaggctctggg
ggcccccaaaaccctggcaaaccccccaccatgtcctacgccagtgccctccgcgcccca
cccaaacccagagctcgtcccgaacaggtcaaaaagcacagcgacccactttcccttctc
caagagctgagcataggaagttcaaatggtagcaacggatactattcctattttaaatga
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