Oncorhynchus tshawytscha (Chinook salmon): 112265151
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Entry
112265151 CDS
T05605
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112265151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112265151
03019 Messenger RNA biogenesis [BR:
otw03019
]
112265151
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112265151
RNA polymerase I system
112265151
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
112265151
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF3912
RimP_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
112265151
NCBI-ProteinID:
XP_024297990
LinkDB
All DBs
Position
LG13:complement(54003656..54031955)
Genome browser
AA seq
1086 aa
AA seq
DB search
MSDSEDSDFSDNQSEQSSEAEEVDKNEAEEDGQASLSGSDKAAEEEGEDLADEEEYDEEE
EEDDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKVNEEAEVSNIDHVVLD
EDNSGSRRLQNLWRDSREEALGEYYMRKYAKQSGNDFPGGSEELSDDITQQQLLPGVKDP
NLWTVKCKIGEERATAIALMRKFIAYQFTETPLQIKSVVAPEHVKGYIYVESYKQTHVKA
AIDGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVE
PSQNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPTQRLFDAEKIRSLGGDVSHDGD
FMIFEANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETAGKERE
HNLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDH
VKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWG
ELVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVK
DIVKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNF
TVGGFAPMSPRISSPMHPGGGGQQQRGGGGGGQMGRGRGRRDNDLIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHGGMTSTHGRTPMYGSQTPMYGT
GSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRADDDYEFGY
DDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQG
SYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GGYNPHTPGSNIDQTSCDWVTTDILVRVKDTFLDSQVVNQTGIIRSVTGGMCSVFLQDTE
KVVSISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRF
LGKLEL
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaggacagcgacttctctgacaaccagagtgaacaaagcagcgaagcc
gaggaggtggacaaaaatgaggcagaggaagatgggcaggcaagtttatctggcagtgat
aaagcagcagaagaggaaggggaagacttggcagatgaggaggagtatgacgaagaggag
gaagaggacgatgatgaccgtcccagaaagaaacccaggcatggaggtttcatcttggat
gaagccgatgtggacgatgagtatgaagatgaagacccgtgggaggaaggtgctgaggat
attttggagaaagttaacgaggaagctgaggtgtccaacattgaccatgtggtcctggat
gaggataactctggctcccgcaggctgcagaacctctggagagattccagagaggaggcc
ttgggggaatattacatgaggaaatatgccaagcaatctggaaatgattttcccgggggt
tctgaggaactgtctgatgacatcacccagcagcagctgctccctggtgtcaaggatcct
aatctttggacagtcaagtgtaagattggggaagagagagcaactgccattgccttgatg
aggaaattcattgcctatcaattcacagaaacgcccctccaaatcaagtcggtagtggct
cccgaacatgtcaaaggttacatctatgtagagtcgtacaagcagactcacgtcaaagct
gcaattgacggaataggcaacctgaggatgggcttctggaaccagcagatggttcccatc
aaggagatgacagacgtcctcaaggtggtcaaagaggtgaccaacctcaagcccaagtcc
tgggtccgactcaagagaggcctatacaaagatgacatcgcccaggtggactatgtggag
cccagtcaaaacacgatatcactgaagatgattcccaggatagatttggacagaatcaag
gcccggatgagcatgaaagactggtttgcaaagcggaagaagttcaagagaccaacccag
agactcttcgatgcagaaaagatcaggtcacttggtggggatgtcagccatgatggagac
ttcatgatatttgaagctaaccgctacagccgcaaagggttcctcttcaaaagctttgcc
atgtctgctgtgatcactgaaggagtgaaacccactctgtcggagctggagaagtttgag
gaccagccagaaggcattgatctggaggtggtgactgaaaccgcaggtaaagagcgtgag
cacaacctccaggccggggacaatgtggaggtgtgtgaaggggagctgatcaacttgcag
ggcaaaatcctgagtgtggatggcaacaagatcactatcatgcccaagcatgaggacctc
aaggatcctctggagttcccggcccacgagttgaggaagtacttccgtatgggtgaccac
gtcaaggtgatagcaggccgctacgagggcgacaccggcctcatcgtacgtgtggaggag
aactttgtcatcctcttctctgacctcaccatgcacgagttgaaggtcctgccccgggac
ttacagctgtgctctgagacggcgtcaggggtagatgccgggggccagcacgagtggggg
gagctggtccaactggacccccagaccgtgggagttattgtcaggctggagagggagaca
ttccaggtcctcaacatgcatggcaaggtgctgacagtgcgtcaccaggcagtgaatcga
cggaaagacaaccgctttgccgtggcactggactctgagcagaacaatatccacgtcaaa
gacatcgtcaaggtcatcgacgggccacactcggggcgtgagggggagatccgccacatt
ttccgaggctttgccttcttgcactgcaagaagctggtggagaacgggggcatgtttgtc
tgcaagacacgccacgtggtgctggccgggggctccaagccccgagatgtcaccaacttc
actgtgggaggcttcgcgcctatgagtccacgcatcagcagccctatgcatccaggtggt
ggtggccagcagcagaggggcggtggaggtggaggacagatggggcgtggccggggcagg
agggacaacgacctgattggacagaccgtccgcatctcccagggaccatacaaggggtat
attggagtagtgaaggacgccacagagtcgacagccagagtggaactgcactcgacatgc
cagaccatctctgtggaccgacagcgtctcaccacaatgggagccaagaggcatggagga
atgacttccacccacggacgcacccccatgtacggttcccagacccccatgtacgggaca
ggctcccgtacccctatgtacggctctcagacccccttacacgatgggagccgtactcct
cactacggctcgcagactccgctgcatgatgggagcaggacgccggggcagagcggagcg
tgggaccccaataaccccaacacaccgtccagggcggatgacgactatgagtttggttat
gatgacgagccctccccgtcccctcagggctacgggggcacgcctaacccccagaccccc
ggctacccagaggtgccgtcaccccaggtcaacccccagtacaacccccagacaccaggc
accccagccatgtacaacacagaacagtactcgccgtacgctgccccctccccacagggc
tcgtaccagcccagccccagtcctcagagttaccatcaggtggcacccagcccagtgggc
taccagaacacacactcaccagccagctaccaccccaccccctcacccatggcatatcag
gccagtccgagccccagcccggtaggctacagccccatgacccccggcgccccctccccg
ggcggctacaatccccacacccccggctccaacatcgaccagacctcttgcgactgggtc
accaccgacatcctggtgcgcgttaaagacaccttcctggacagccaagtggttaaccag
acaggcatcattcgcagtgtcacgggtggcatgtgctccgtcttcctccaggacacagag
aaggtggtgagcatctccagtgaacacctggagcctgtcaccccaactaagaacaacaag
gtgaaggtgattctaggggaggaccgcgaggccacggggatcctactgagtatcgacggg
gacgacggcatcgtaaggatggagctggatgaccagctgaagattctcaacctccgcttc
cttggcaagctggagctctga
DBGET
integrated database retrieval system
