KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112265247
Entry
112265247         CDS       T05605                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    112265247 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:otw03021]
    112265247 (taf5l)
   03036 Chromosome and associated proteins [BR:otw03036]
    112265247 (taf5l)
Transcription machinery [BR:otw03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     112265247 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     112265247 (taf5l)
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     112265247 (taf5l)
    STAGA complex
     112265247 (taf5l)
    TFTC complex
     112265247 (taf5l)
    SAGA complex
     112265247 (taf5l)
    SLIK complex
     112265247 (taf5l)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I TFIID_NTD2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_HPS5 RMC1_N Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_WDR19_1st Tricorn_2nd Beta-prop_VPS8 PEP5_VPS11_N WD40_like Beta-prop_WDR75_2nd PROPPIN WD_LRWD1 Nbas_N Beta-prop_ELP1_1st Cytochrom_D1
Other DBs
NCBI-GeneID: 112265247
NCBI-ProteinID: XP_024298146
LinkDB
Position
LG02:66030225..66034335
AA seq 607 aa
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGTKLSQSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAVLPWGQEVSRVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLALLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHIQVEVTSSPRTDYQLYGMTGAGATGATTTAPNSTSSWSGADGTERRE
AAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNTAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHSTTHADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggacactgaaagttccctgaaggggactaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcc
ccttgccaagctgaccctcaacagtacgagacacaattttccagacttcgcaattttctt
tcagaagcggtgttgccatggggccaggaggtgagccgcgtcctgtacccgctcttcgtt
tacctccacctggacatggtgcgctgcagcctgaagggggcggtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
catgtcctcacccagcaggatgtcaccgccaaccccaagctcctggccttactcgaccac
aagtatgtggtgaacctgacggagccggcctacagttacttgttacgctacctgcagagc
gaagacaacagtaccctctgcagggccctcagcacccacatccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtacgggatgacgggtgcgggagctaccggggccacc
accacggcccccaactctacctcctcgtggtcgggtgcggatggcactgagcgaagagag
gcagcgggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaagaaggtgcgtgagggtccgccgtcactcaccaccgtgtgcttctat
gccttccagcacacggagcagctactgaacactgcagaggtgtcggctgacagcaagctg
ctggccgccgggttcgacagctcggccgtcaagctatggagtcttagggccaggaaactg
aaggccaggccgcaccggaccgacgtgtcacacatccgcctagcatgtgacgtgctggaa
gaggaggcagatgaagaggacggctcaggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacagccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctgggcagcttcaccaacacggccctctaccagggt
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctactttgccagcggc
tcccacgaccgcaccgcccgcctctggaccttctccaggacctaccctctgaggctctat
gccggccacctagcggacgtggactgcgtcaagttccatcccaactcaaactacctggcc
acaggctcaacggataaaaccgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccccgtgttgtccgtagccttcgcgcccaatgggaagtac
ctggcatcggcgggcgaggaccaacgggtgaagctgtgggacctggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggacaactcagtcagggtgtgggacatccgaaactcc
cacagcacaacccacgcggatggctcgtccagcgagctggtggggctctacacaggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaaca
gcgcaggagaaacatggacagtag

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