Oncorhynchus tshawytscha (Chinook salmon): 112265247
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Entry
112265247 CDS
T05605
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112265247 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112265247 (taf5l)
03036 Chromosome and associated proteins [BR:
otw03036
]
112265247 (taf5l)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112265247 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
112265247 (taf5l)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112265247 (taf5l)
STAGA complex
112265247 (taf5l)
TFTC complex
112265247 (taf5l)
SAGA complex
112265247 (taf5l)
SLIK complex
112265247 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
TFIID_NTD2
NBCH_WD40
ANAPC4_WD40
RMC1_N
WD40_like
PROPPIN
Nbas_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
112265247
NCBI-ProteinID:
XP_024298146
LinkDB
All DBs
Position
LG02:66030225..66034335
Genome browser
AA seq
607 aa
AA seq
DB search
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGTKLSQSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAVLPWGQEVSRVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLALLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHIQVEVTSSPRTDYQLYGMTGAGATGATTTAPNSTSSWSGADGTERRE
AAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNTAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHSTTHADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggacactgaaagttccctgaaggggactaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcc
ccttgccaagctgaccctcaacagtacgagacacaattttccagacttcgcaattttctt
tcagaagcggtgttgccatggggccaggaggtgagccgcgtcctgtacccgctcttcgtt
tacctccacctggacatggtgcgctgcagcctgaagggggcggtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
catgtcctcacccagcaggatgtcaccgccaaccccaagctcctggccttactcgaccac
aagtatgtggtgaacctgacggagccggcctacagttacttgttacgctacctgcagagc
gaagacaacagtaccctctgcagggccctcagcacccacatccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtacgggatgacgggtgcgggagctaccggggccacc
accacggcccccaactctacctcctcgtggtcgggtgcggatggcactgagcgaagagag
gcagcgggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaagaaggtgcgtgagggtccgccgtcactcaccaccgtgtgcttctat
gccttccagcacacggagcagctactgaacactgcagaggtgtcggctgacagcaagctg
ctggccgccgggttcgacagctcggccgtcaagctatggagtcttagggccaggaaactg
aaggccaggccgcaccggaccgacgtgtcacacatccgcctagcatgtgacgtgctggaa
gaggaggcagatgaagaggacggctcaggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacagccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctgggcagcttcaccaacacggccctctaccagggt
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctactttgccagcggc
tcccacgaccgcaccgcccgcctctggaccttctccaggacctaccctctgaggctctat
gccggccacctagcggacgtggactgcgtcaagttccatcccaactcaaactacctggcc
acaggctcaacggataaaaccgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccccgtgttgtccgtagccttcgcgcccaatgggaagtac
ctggcatcggcgggcgaggaccaacgggtgaagctgtgggacctggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggacaactcagtcagggtgtgggacatccgaaactcc
cacagcacaacccacgcggatggctcgtccagcgagctggtggggctctacacaggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaaca
gcgcaggagaaacatggacagtag
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integrated database retrieval system
