Oncorhynchus tshawytscha (Chinook salmon): 112265272
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Entry
112265272 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 54-like isoform X2
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112265272
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112265272
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112265272
Membrane trafficking [BR:
otw04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
112265272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
SBP_bac_6
Motif
Other DBs
NCBI-GeneID:
112265272
NCBI-ProteinID:
XP_024298187
LinkDB
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Position
LG02:61904686..61923110
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AA seq
987 aa
AA seq
DB search
MASSHSSSPVPHPSSGGSEGIFRKDRDPSSRHYRPVHSLPDVCPKEPTGEAARVLCEGPS
VVADQHRWTVYNSKVNLPAALNDPRLAKRESDFFTKTWGLDFAETEVMPSFYLPNITKEH
FGPYLQETAQREKIHERCKSICSNKDEMDAVSSITNNHDKSRTELEQVPKIFMKPDFALD
DPTTFNAVLPWSHFNSAGGKSSRDMASSRLLQEKLSHYLDVVEVSIARQISLRSEAFFHA
MSSQHELQDRLTETARAVAVLRGRAAAIERIMCEGPLRALRQALTRSNCARLHNKLKLMA
AVHQSQPTVQLLLSTSEFVGALELIATTKEVLQLELQGIHSFRHLGSQLCEMEKLIDKMM
VGDFSMYSRSDLNRSLEDDGLVMEKDRLESLVFGLLRQRKLNFLDIYSDEMILAAKSIVT
QSVVDSVSQIEEIDTDIVTKLADQMRLMTFPQWFELLKSVFENFILFLKRIKVTLSVVRN
VVLEALDSNQKSRLLERAAVGGLTEAPGTPLNQEEAELAYLTHEGLFISDALNDAQLHLG
ASTGQEQSSTVGPRQALSRMDGCGSDSASGTTESSTSREHAFQPGGAAISSSEDLMPSDL
ELGRVANNIQELLYTASDVSHDRCVKVLMARAKDGSLERLSSAEFVFLSQAVEGFVRDTE
KLCCRRSVSLRGALQSQANRFVHRFHEERKTKLSLLLDNERWKQAEVPAEFQDLVNSIAD
GRITLPDRKPQGTEERKPSDYLHIDGQKYAVVGTVLLLIRIFLEYCQCVNDIPSISTDML
TRLSDLLKHFNSRSCQLVLGAGALQVVGLKTITTKNLALASRCLQLVVHYIPVIRAHFET
KLAPKQYSVLRHFDHITKDYNDHIAEISAKLMAIMDSLFEKVLSKYEVKAPMPSACFRNV
CKQMAKMHEALYELLPEEQAQMLFLRINASFKMHLKRQLARLGVHHDGGPQHGLVTVDVA
FYTENVQSLRALEMLDLNMAEIWEQKR
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggcctccagccacagctcctccccagtgcctcatcccagcagtggtggcagcgagggg
atcttccggaaggacagggacccttcctcacgacactacaggcccgtccactccctgccc
gacgtctgccccaaggagcccacgggcgaggcagcccgggtgctgtgcgagggcccgtcg
gtggtggccgaccagcacaggtggacggtgtacaactccaaggtgaacctcccggccgcg
ctgaatgaccctcgactggccaagagggagtctgacttcttcaccaaaacctggggcctg
gactttgccgagacagaagtcatgccctccttctacctccccaacatcacaaaggaacac
tttggcccctacctgcaggaaacagctcagagggagaaaatccatgagcgatgcaagagt
atctgttccaacaaggatgagatggatgctgtctccagcatcacaaacaaccacgataaa
tcaagaacagagttggagcaggtgcccaagatcttcatgaagcctgactttgcgctagac
gacccaacgacctttaacgcggtcctaccatggtcccacttcaacagcgctggcgggaag
agcagcagggacatggcatcgtcacggttactacaggaaaagctgagccactacctcgac
gtggtggaggtgagcatcgcgcggcagatctccctgcgctccgaggccttcttccacgcc
atgtcctcccagcacgagctccaggaccgcctcaccgaaaccgcccgcgccgtggcagtc
ctccggggccgcgcggccgccatcgaacgcatcatgtgcgaaggtccgctgcgggcactg
cggcaggcgctgacgcgctccaactgcgcgcggctgcacaacaagctgaagctgatggcg
gcggtgcatcagagccagcccactgtgcagctgctgctctccacctcggagttcgttggg
gccctggagctcattgccaccaccaaggaggtgctgcagctggagctgcaggggatacac
agcttcagacacctgggctcgcagctgtgtgagatggagaagctgatagacaagatgatg
gtgggggactttagcatgtactccaggagtgacctcaacaggagtctggaggacgacgga
ctggtcatggagaaggacaggctggagtctctggtgtttggcttgctgaggcagcggaag
ctgaattttctggacatctacagcgacgagatgatcctagcagccaaaagcatcgtcacg
cagtctgttgtcgactcggtgtcgcagattgaagaaattgacactgacatcgtcacgaag
ctggcagaccagatgcgtctgatgaccttcccccagtggtttgagctgttgaagtccgtc
tttgagaacttcattctcttcctgaagaggatcaaggtgacactcagtgtggtgaggaat
gtcgtgttggaggcgctggacagcaaccagaagagccgtctgctggagcgggctgcagtg
gggggcctgactgaggccccaggaacccctctcaaccaggaggaagcagaactggcctac
ctcacgcacgagggccttttcatcagcgacgctctcaatgatgcccagctgcacctgggg
gcaagcacaggccaggagcagagctccaccgtggggcccaggcaggccctatcacgtatg
gatggttgtggtagtgactctgcctcagggaccaccgagtcgtccaccagcagggaacac
gctttccagccaggaggggccgccatctcgtccagtgaggacctgatgcccagtgacctg
gagctgggccgcgtggccaataacatccaggagctgctctacaccgcctcagacgtcagc
cacgaccgctgtgtcaaagtcctcatggccagagccaaggatggctccctggagcgtctg
agctcggcagagtttgtgtttctgtcccaggcggtggaaggctttgtgagggacacagag
aagctgtgctgcaggcgcagtgtgtccctaaggggggcgctacagagccaggccaaccgc
tttgtccaccgcttccacgaggagcgtaagaccaagctcagtctgctgctggacaatgag
cggtggaagcaggcagaggttcctgcagaattccaggacctggtcaactccatagcagat
ggcaggatcacactacccgaccgcaaaccccaaggcacagaagaaaggaaaccaagtgat
tatttgcacattgatggccagaaatatgctgttgttggcacggtgttactactgatccgg
atcttcctggagtactgtcagtgtgtcaacgacatcccttccatctccacggacatgctc
actcgcctctcagacctactcaagcacttcaactcgcggagctgccagttggtcctgggg
gcaggagcactacaagtggtgggactcaagaccatcaccactaaaaacctggccctggcc
tctcgctgtcttcagctggtggttcactacattcccgtcatcagggcccactttgagacc
aagctggcgcccaagcagtacagcgtcctcaggcactttgaccacatcactaaggactac
aacgatcacatagcagagatctccgctaaactgatggcaatcatggacagcttgtttgag
aaggtgctgtctaagtatgaagtcaaggcccccatgccctcggcctgctttcgcaacgtg
tgtaaacaaatggccaaaatgcacgaagccctttacgagctcctacctgaggaacaggca
cagatgttgttcctgaggatcaatgcaagctttaaaatgcaccttaaaaggcagctggcc
cgtctcggcgtgcaccatgacggtggacctcaacatgggctggtgacggtggatgtggca
ttttacacagagaacgttcaatcactgagggcccttgaaatgctggacttgaacatggcc
gagatctgggagcagaagaggtga
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