Oncorhynchus tshawytscha (Chinook salmon): 112265322
Help
Entry
112265322 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X2
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112265322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112265322
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112265322
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
HECT type E3
112265322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
112265322
NCBI-ProteinID:
XP_024298260
LinkDB
All DBs
Position
LG13:58073669..58117194
Genome browser
AA seq
2052 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQIKHKANSPPESRRSKSKASKAA
PSSASGQSRGHSSRSSLSLSVASFVLQGDPEAAGTSEREPIGHQSKTEGTTRGLKRNSAP
DLNTYTPAKKSKSNPPPRDHTTEAKKGPAKSSKKRPLAPELPTGRGQSKKSGPSGASPNL
KRKKADSLPCLSSTAGSLPNRTDGRFAKPTKLASKSAASAKAGCSTVTDSSSSASTSSSS
STGTNSATATQGARLKQGKDQNKARRSRSASSPSPRRSTRDKEQAKAAVSSKFEWAARFS
PKVNLPKPKLSLPSSSKTETASKPGPSGLQAKLASLRKSTKKRSESPPAELPSFRRRTRQ
KTTGSCASTSRRGSGVGKRGAAEARRQEKMADSDNNQDGANSSAARTDEAPQGASGTASS
SVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGASSK
AQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALMTLLQMEHNFDI
MNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHSKAI
LQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLTQRLTHQDKK
SVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVIPPVLSSGMFIMVVRMFSL
MCSNCPCLAVQLMKQNIAETLRFLLCGAANGSCQEQIDLVPRSPQELYELTSLICELMPC
LPREGIFAVDLMLKKGSAQATEGAIWQWRDDRGLWHPYNRIDSRIIENGEDEISLSTLGR
VYTIDFNSMQQINEDTGTARGIQRKPNPLANPTTGGHQEVRREDARAQLMKEDPELAKCF
IKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNHAVSSHIASMLSSQ
DLKIVVGSLQMAEILMQKLPDVFSVFFRREGVMHQVKNLAESEAFLTSPPKACTSGTASL
CTTTISTANTTAATTATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKRGPRRPKY
SPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGAQTNSTNSEPSRTASVSGLAR
ALPKDSVSNNRDKIKAWIKEQACKFVARYFNNENIDGSNPALNVLQRLCTATQQLSLQMD
GGVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSSSDRDLVSRDVRLKRFLHVFYG
CPTPGMEPAGRLEPSENGPLLSLVRKMNNCLSQMEQFPVKVHDFPSGNGNGSRGSQALKF
FNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREEDEDSDDD
GSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQFSLQAEEERESTDDE
ANPLGRAGIWTKTHTIWYKPVREDEDGTKDVVGGKRGRAQTAPTKTSPRNAKKQDELWHD
GVCPSVASPLEMYLMSEPPESITFDDPSLDVNLLLRVLHSISSYWFYLYDNAVSKEIIPT
SEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVTAFDRDR
AMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQDLGSSRAMLEIQY
ENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVALSNPKGSQEGTKYMFSSRGLFAVP
FGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHETSISSHDLIN
IDPGVAKSIQHLEDIIRQKRRLEQDRSQTRETLQQALESLNMNGCSVEDLGLDFTLPGFP
NIELKKGGKDIPVTIYNLEEYLRLVVYWTMNEGVSRQFESFREGFESVFPLHHLQYFYPE
ELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFDVLSSFDAEQQRLFLQFVTG
SPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIMRKKLLI
AAREGQQSFHLS
NT seq
6159 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccatacagtcgcaggaaggttgcagtcagagcagataaaa
cataaagcaaattcacctcctgaaagtagaagatctaaatctaaggcttccaaagccgca
cccagctcagcctctggccagtccagagggcacagctcaagaagcagtctgtcactgtct
gtggcttcatttgtgctgcaaggcgacccagaggccgcaggtacatcagagcgagagcca
ataggacaccaatccaagactgaaggcaccacccgagggttgaagagaaattctgcacct
gaccttaacacctacaccccagccaagaagtcaaaatccaaccccccacccagagaccat
accactgaggccaagaaaggccccgccaaatcctccaagaagagacccttggctccagag
ctgcctacaggccgcggccagagcaagaagagcgggccctctggggcttcaccaaatctt
aaacggaagaaggctgactccctcccctgtctgagcagcactgctgggtcgctccccaac
cgtaccgacggcagatttgcaaaacccaccaagctggcgtcgaagtcggccgcctcagcc
aaagctgggtgtagcacggtgactgactcctcctcttctgcctccacctcttcttcctcc
tccacaggcaccaacagtgctaccgccacacagggtgcaaggctcaagcagggcaaagac
cagaacaaggcacgtcgttcccgctccgcctccagcccctctccacgccgaagcacccgc
gacaaggagcaggccaaagccgccgtctcgtccaagtttgagtgggcggcccgcttcagt
cccaaggtcaacctgccaaagcccaaactgtccctacccagctcctccaagacagagacc
gcctccaaacctggaccctcaggactacaagccaaactagcaagtttgaggaagtccact
aagaagcgcagcgagtctcctccagcagagctccccagctttcggcggcgcacacgccag
aagaccacgggctcctgcgccagcaccagtcggcgaggctcaggcgtgggcaagcgcggg
gcagccgaagctcgccgacaagagaagatggctgactcggacaacaaccaggatggggcc
aactcctcggctgcccgcactgatgaggccccgcagggggcttcgggtacagcttctagc
tcagtggccggagctgtagggatgaccacatccggtgagagtgagtccgatgactctgaa
atgggcagactccaagccctgctggaggccaggggtctacccccacacctctttgggccc
ctgggaccccgcatgtcccagctgtttcacagaactataggcagtggagccagctccaag
gctcagcagctgctgcagggcctgcaggccaccggcgacgagtcccagcagctccaggcc
gctatcgagatgtgccagctgctagtgatgggcaacgaggagacactaggaggcttcccc
gtgaagagcgtggtgcctgctctgatgacattgttacagatggagcataactttgacatt
atgaaccatgcctcccgtgctctcacttacatgatggaggcgctgcctcggtcctctgct
gtggtcgtggatgccatccccgtcttcctggagaagcttcaggtgattcagttcattgac
gtggcggagcaggccctgactgccttggagatgttgtcaaggcgacacagcaaagccatc
ctgcaggctggtggcctagctgactgtctgctgtacctggagttcttcagcatcaacgcc
cagaggaatgccctggccattgcagccaactgctgccagagcatcacccctgatgagttc
cactttgtctctgactctctgccactgctgacccagagactcacacaccaggataagaaa
tccgttgaaagcacttgtctctgttttgccaggctggtggacaactttcaacacgaggag
aacctgctacagcaggtggcctcacgggacctgctgaccaacatccagcagctgctggtg
gtcatcccgcccgtgctcagctcgggcatgttcatcatggtggtgcgtatgttctccctc
atgtgctccaactgcccctgtctagccgtgcagctcatgaagcagaatattgcagagact
ctgcgcttccttctgtgcggagcggccaacggtagctgccaggagcagattgacctggtg
ccccggagcccccaggagctctatgaactcacctcactcatctgtgagctgatgccctgc
ctgcccagagagggcatctttgctgtggatctcatgctgaagaagggcagtgcacaggcc
acagagggggccatctggcagtggagggacgaccggggcctgtggcacccctacaaccgc
atcgacagccgcatcattgagaacggagaggacgagatcagcctgtccaccctgggccgc
gtctacactatcgacttcaactctatgcagcagatcaacgaggacactggcacagcacgg
ggtatccagaggaaacccaaccccttagccaaccccactactgggggtcaccaggaggtg
aggcgggaggatgcacgggcccagctgatgaaggaagaccctgagctggccaagtgcttc
atcaagaccctttttggggtgctgtacgaggtgtacagttcgtcggcaggcccagccgtc
agacataagtgcctccgagccatcctcaggatcatcttcttcgccgatgccgagctcctc
aaggacgtgctgaggaaccacgcggtgtccagtcacattgcctccatgctgtccagccag
gacctgaaaattgtagtgggctctctgcagatggctgagatcctcatgcagaagctgcca
gacgtattcagtgtctttttcagaagagaaggtgtgatgcaccaggtgaagaacctggct
gagtcggaggccttcctcactagtcccccgaaggcgtgcaccagcggcacggctagcctg
tgtaccaccaccatcagcactgcaaacactacggcggccaccaccgccaccccagacctg
ggctcacctagcttccagcacagcatggacgactcgctggacctcagcccacaggggcgg
ttaagtgatgtgctgaagagaaaacgtctgcctaagagagggcccagaaggcccaagtac
tctcctcccagagacgacgacaaagtagacaatcaggccaagagtcctaccactactcag
tcccccaaatcctccttcttggccagtctgaaccccaagacctggggcaagctgggcgcc
cagaccaacagcacaaactctgagccctctcgcacggccagtgtgagtggcctggcacgc
gcccttcccaaggactcggtctccaacaacagggacaagatcaaggcttggatcaaagag
caggcctgtaagtttgtggcacgctacttcaacaatgaaaacattgatggcagcaacccc
gcactaaatgtactccagagactctgcaccgccacgcaacagctcagcctacagatggac
ggtggcgtggagtgcctcgtggagatctgcagcatcgtgtcggagtcggatgtgtcgtcg
ttcgagatccagcacagcggcctggtcaagcagctgctgctctacctgacctccagcagt
gaccgtgacctggtcagccgtgacgtccgcctcaagaggttcctgcacgtcttctacggc
tgcccgaccccggggatggagccggcaggccgcctggagccatctgagaacgggcccctg
ctgtcactggtgcgcaagatgaacaactgcctaagccagatggagcagttccctgtcaag
gtgcacgactttcccagtggcaacggcaacgggagcagaggttctcaggctctgaagttc
tttaacacacaccaactcaagtgtcagctgcagaggcacccggactgcaccaatgtgaag
cagtggaaggggggcccggtgaaaattgaccccctggctttggtacaggccattgaacgc
tacctggtggtccgaggttacggacgaataagagaggaggatgaggacagtgatgatgat
ggttcagacgatgaaattgatgaatctctggcggcccagttcctgaactcaggcagcgtg
cgccaccggctgcagttctacatcggcgaccacctgctgccctacaacatgacggtttac
caggcggtgcggcagttcagcctgcaggcagaggaggagagggagtcaacagatgacgag
gccaacccgctcggacgggccggcatctggaccaaaacccacaccatatggtataagcca
gtgagggaggatgaggatggcacgaaggatgtggtgggagggaagaggggccgggcacag
actgcccccaccaagacctcgccccgcaatgccaagaaacaggacgagctgtggcacgac
ggcgtgtgtcccagcgtggccagcccgttggagatgtacctcatgtcagaacccccagag
agcatcaccttcgacgacccgtctctggatgtcaacctgttgctgagggtgctgcactcc
attagtagttactggttctacctgtacgacaatgctgtttctaaggagatcatccccacc
agtgagttcatcaacagtaagctgacagccaaggccaaccgacagctgcaggaccctctg
gtcatcatgaccggcaacatccccacctggctcacagagctcggcaagacctgtcccttc
ttcttcccattcgacacacggcagatgctcttctatgtgactgcttttgaccgcgaccgg
gccatgcagcgcctcctcgacaccaatcctgagatcaaccagtcagattcccaggacagc
cgtgtggcgccccgccttgacagaaaaaagcgaacgataaaccgtgaggagctgctgaag
caggcggagtcagtgatgcaggacctcggcagctccagagccatgctggagatccagtat
gagaatgaggtgggcacagggctgggtcccaccctggagttctacgccctggtctcccag
gagctgcagagggccgacctcgggctgtggaggggtgaggaggtcgccctgtccaaccca
aaaggaagccaagaagggaccaagtacatgttcagctccagagggctgtttgccgttccc
tttggcaggacaaccaaaccggcacacatcgccaaaatcaagatgaagttccgcttcctg
ggcaagctgatggccaaggctataatggacttcagactgctggacctgcccctagggctg
ccgttctacaagtggatgctgcggcacgagacgtccatcagctcccacgacctgatcaac
atcgacccgggcgtggccaagtccatccagcacctggaggacatcatccgccagaagaga
aggctggagcaggaccgctcccaaacgagggagaccctgcagcaggcgctggagagtctc
aacatgaacggctgctctgtggaggatctgggcctggactttaccctccccggtttcccc
aacatcgagctgaagaagggaggcaaggacatccctgtcaccatctacaatctggaggag
tacctcaggctggtggtctactggacgatgaacgaaggtgtgtcccggcagtttgaatct
ttcagggaagggtttgagtcagtcttccccctgcatcacttgcagtatttctaccctgaa
gagttggatcagctgctttgtggcagcaagtccgagacctgggatgtcaagaccctgatg
gagtgctgtcgtcccgaccacggctacacgcatgacagtcgtgctgtgaggttcctgttt
gatgtgctcagcagtttcgatgcagagcagcagagacttttcctgcaatttgtaacagga
agcccaaggctgcctgttggaggtttccgtagtctgaacccgccgctgaccatcgtgcgg
aagacatttgagtcgacggagaacccggacgacttcctgccgtcggttatgacctgtgtc
aactacctgaagctgcctgactactccagcatcgagataatgcgcaagaaactgttgatt
gcggcccgtgagggccagcagtccttccacctgtcctga
DBGET
integrated database retrieval system
