Oncorhynchus tshawytscha (Chinook salmon): 112265411
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Entry
112265411 CDS
T05605
Name
(RefSeq) sortilin-related receptor
KO
K24498
sortilin-related receptor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112265411
Membrane trafficking [BR:
otw04131
]
Endosome - Golgi transport
Others
Others
112265411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Ldl_recept_a
fn3
Sortilin_C
Ldl_recept_b
Pur_ac_phosph_N
CRLF2-like_D2
BNR_6
Motif
Other DBs
NCBI-GeneID:
112265411
NCBI-ProteinID:
XP_042151990
LinkDB
All DBs
Position
LG13:complement(59291825..59363284)
Genome browser
AA seq
2263 aa
AA seq
DB search
MGDVPPTLTPIATRISSSRYLNETYTNMATRQTLKMLSPLRFTIYLLFLFSPGTFSSTLR
LHRDQRFLLPQDRGFSTVNAKEEFIHGIGADAKRRAARSAREDIASGMYQHRNRRSAVQP
PVPKVYGQANLNDSHNQMVVHWAGEKSNVIVALARDSVGATGPKTSSVYVSSDYGTSFSP
ISERFQLSGEKEKEGNKQVISQFYHSPADNKRYLFADSTNSYLWNSFDFCKTIQGFSIPF
KPTDLLLHSKRANLVLGYDGSHPNKQLWKSDDFGETWVLIQEHVKAYFWGVEPYDSPTMV
LVQRHEPQGVSSILSSTDFFQSGQNRRVILERVDNFQLRDKYMFATTSTTLLGSHEPSSV
QLWVSYNRQPMKAAQFMTRHPITEYYIADASEDQVFVCVNHVNNVTHLYISDTQGLSFSL
SLENVLYYSPEGSGSHTLIRYFASEPFADLHRVEGLRGVFVATLINGSLSEDNMRSVITF
DKGGTWELLQAPSADSLGGTLDCQLSKGCSLHLAQRWSQLLNIQLRRMPVLSKESAPGLI
MATGSVGKNLANKPNVYVSSSAGARWREALAGPHFYTWGDHGGILMAIAQGGSTTHLKFS
TNEGETWTDFRFSDREVYVYQLLTEPGEKSTIFTVFGSYADQRHSWLILQVNASDVLGVP
CAEGDYKRWSPSDERGNDCLLGSEMVYKRRTPHATCFNGEDFDRPVTVSNCSCTRQDYEC
DYGFKLSVDLSLQVCLPDPEFSGNLYAPPVPCPVGTTYRRSTGYRKVSGDSCSGGDVEAR
LDGEMLPCPVGESNEFILYAVRNSIHRYDLATGTDQALPLSGLREAVALDFDYERNCLYW
ADISLDTIQRLCLNGSTGQEVIVRKDLQNVEALTFDPISRLLYWVDAGAQKIEVSNPDGD
LRHTLLNSSVLEHPRALVLMPGESLMFWTDWGDRAAGVYRGYMDGSNVSCIVSEGVRWPN
GITADDQWLYWTEAYGDRIERADFAGGQRNVVMEGLPHPYAIAVFKNDLYWDDWSRRGIF
KASKAGSKDNELIVGRLTGVMDLKIFYKGKTRGHNACADQPCSLLCLPQPGHRHTCVCPD
GTPTTTRPDGQLQCQCPTGYQLHNSTCVKTEHTCLSNQYRCSNGKCISSIWKCDSDNDCG
DMSDEQECPTTSCDPSIQFRCVVSGSCIPLAFKCDHEDDCGDNSDEEHCESHQCGPGEFT
CARGVCIREAWRCDGDNDCRDWSDEANCTVGHHTCEASRFQCLTGHCIPKRWVCDGDDDC
QDSSDEEQAHCVGDRCNGFLCSNGTCLPASAHCNGVQDCPGGADEQHCDPLCTRYMDFVC
QNRAQCLFQSLVCDGTKHCEDGSDEDVAYAGCSTHPEFEKTCDAYNFQCANGVCVSLGWK
CDGMNDCGDYSDEANCGSPTEGPGCTRDFQYECRNGRCVPSWWKCDGENDCGDWSDEAQC
TGGVTPHTPAPGPSSCAPNRFHCGSGACIVNSWVCDGYADCPDGSDELGCPTGTANGTAN
GTANGTATQAPWPTHAPPLPPGRCSKSQFLCRKPPTCIPDWQRCDGHQHCLDGSDEAHCP
TRGPLTCVNGTHCADGEACLLDGEKCDGFMDCSDHSDEDNCTSDSLVYKIQNLRWTADFS
GAITLTWSRPKNLPLASCYFLIYYRLVGTQQWTSMDTHSNKSSYTLSVLKPDTTYQVKVL
TQCLSKQHKTNDVLTLRTPEGLPDPPRNLQLSCDNGEDGMVEASWSAPDKAHGLIREYIV
EYSEKGVEWFSQRSTGNGVEVKNLQPSTLYKFRVAAVTGRGMGNWTEVKSIIPKKALPPP
SVITDSITEDSMSLSFSFNSQYEVRQYVVVLSWVFDAHVKESRNYTVRGSILKAANLTTG
TIYEVAVWAQTGVGDSPTALSRQQTKGTQPEPPLLKARALNQSSVDCSWTVTGSPAQVYG
IFFATSFLDLYRSPHSVNTSDSSRTVTVDSDEQYLFLVRAISPYLGPPSEYAVVKMIPNE
RLPPRNLHKVRVEKTQAMLKWQPPYDSPSAPLTYAVHLKDVVRKTESSYKLTTQNNTVEY
CLKGLEPGGHYSVSVRLRNMSKEASYTLNTMPLPAPEALKILTEKDHVFLFWKSLAVKER
SFNESRGYEVHVYDSLSNSSVLLGNTTETFFRISSLLAGHNYTFSVQARCLFNGQLCGES
ALLLYDQLGQGPSEAVRSSGQSGDMAVVVVPVLFLLLLGLCGGLVVLYLRHRRLQNNFTA
FANSHYNSRLGSAIFSSGDELGDDDEDAPMISGFSDDVPMVIA
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atgggggacgtgcctcctacgcttactccaatcgccactcgaataagctcttctcgttac
ctaaacgaaacatacacaaacatggcgacaagacagacactcaagatgctgtctcctctt
aggtttacaatatatttgttatttttattttctcccgggacattttcttccacccttcgt
ctgcatcgagaccagcgtttcttgctaccgcaggacaggggtttttctacggttaacgca
aaggaagaatttatccatggaataggcgcggatgcgaagcgacgagcggcacgtagtgca
agggaagacatagcttcgggcatgtatcagcatcgcaatcggcggagtgcagtccaacca
cccgtgccaaaggtgtatggacaggccaacctgaacgattcccacaaccagatggtggtg
cactgggccggggagaagagcaatgtcatcgtggcgctggccagagacagtgtcggagcc
acaggtcccaaaactagctcggtgtacgtgtcttccgactatggaaccagcttctccccc
atctcagagaggtttcagctgagtggggagaaggagaaagaggggaacaagcaggtcatc
tcccagttctaccacagccccgctgacaataagaggtacctctttgcagacagcaccaac
agctacctctggaactcctttgacttctgcaagaccatccaggggttctccatccccttc
aagcccacagatctgctgctgcacagcaagagagccaacctggtcctgggctatgacggc
tcccaccccaacaaacagctatggaaatctgacgattttggagagacatgggtgttgatc
caagagcacgtgaaggcatatttctggggtgtggagccgtacgattcccccaccatggtg
ctggtccagaggcacgagccccagggggtgtccagcatcctcagcagcaccgacttcttc
caaagcgggcagaaccgccgagtcatcctggagagagtggacaacttccagctccgggac
aagtacatgttcgccaccacttccacaactttgttggggagccatgagccgtcgtccgtc
cagctgtgggtatcctacaaccgtcagccaatgaaagccgcacagttcatgacccgccac
ccaatcacagagtactacatcgctgacgcttcggaggaccaggtgtttgtttgcgtcaac
cacgtcaacaacgtcacccacctgtacatctcagacacccagggcctgtccttctccctg
tccctggagaatgtgttgtactacagcccagagggttcgggcagccacaccctgatcagg
tactttgccagcgagccctttgctgacctgcaccgcgtggagggtctgcgcggcgtcttc
gtggccacgctcatcaacggctcgctcagcgaggacaacatgcgctctgtaatcaccttc
gacaaggggggcacctgggaactgctgcaggccccctccgccgacagcctgggaggaaca
ctggactgccagctctccaagggctgctccctccacctggcccagcgctggagccagctt
ctcaacattcagctgcgcaggatgcccgtactgtccaaggagtcagcaccagggctcatc
atggccacaggttctgtgggcaagaacctggccaacaagcccaacgtgtatgtgtccagc
agtgctggggccagatggagagaggcgctggccggtcctcacttctacacgtggggtgac
cacggcggtatcctcatggccatcgcccaggggggctccaccacacacctcaagttcagt
accaatgagggggagacgtggacagacttccgtttctctgacagggaggtgtatgtctac
cagctgttgacggagccgggggagaagagcaccatctttaccgtgttcggctcctacgcc
gaccagagacacagctggctcatcctgcaggtcaacgccagcgacgtgctcggcgtgccg
tgcgccgagggagactacaagcgctggtccccgtcagacgagcggggaaacgactgcctt
ctgggtagtgagatggtgtacaagcgccgcacgccccacgccacctgcttcaacggggaa
gactttgaccggcccgtcaccgtgtccaactgctcctgcacacgccaggactacgagtgt
gactatggcttcaagctgagcgtggacctgtccctccaggtgtgcctgcccgaccccgag
ttctcggggaacctctacgcccctcccgtgccctgccccgttggaactacctaccgtcgc
agtacggggtacaggaaggtgtctggggacagctgtagtggaggcgatgtagaagccaga
ctggatggagagatgctcccctgtcctgtaggagagagtaatgagttcatcctgtacgct
gtgaggaactccatccatcgctatgacctggccacagggaccgaccaggccctgcccctc
tctggtctccgcgaggccgtggccctggactttgactacgaaaggaactgcctctactgg
gccgacatctcgctggacaccatacagaggctttgtctgaacggcagtacgggacaggaa
gtgatcgtaaggaaagacctgcagaatgtggaggccctcacctttgaccccatcagcagg
ctgctttactgggtggatgccggagcgcaaaagattgaggtgtctaaccctgatggggac
ctacgtcacactctgctcaactcctcagtgctggagcatcccagagctctggtcctcatg
ccaggagagagcctgatgttctggacggactggggcgaccgcgcggccggcgtgtaccgc
ggctacatggacggctccaacgtgtcatgcatcgtgtccgagggcgtccgctggcccaac
ggcatcacggcagacgaccaatggctgtactggaccgaggcctatggcgaccgcatcgag
cgggccgacttcgccggcgggcagcgcaacgtggtcatggagggcctgcctcacccctat
gccattgctgttttcaagaatgacctgtactgggatgactggtcaaggaggggcatcttc
aaggcttccaaggcaggttccaaggacaatgagctgatagtgggtagactgactggggtc
atggacctcaaaatcttctacaagggcaagaccagaggccataatgcctgtgcagaccaa
ccctgcagcctactgtgtctgccccagcccgggcaccgccacacctgtgtctgccccgac
ggcacgcccaccaccacccgacccgacggacagctccagtgccagtgtcccaccggctac
cagctccacaacagcacctgcgtcaagacagaacacacgtgcctgtccaaccagtaccgc
tgctccaacggcaagtgtatcagcagcatctggaagtgtgacagcgacaacgactgtggc
gacatgagcgacgagcaggagtgccccaccacctcctgtgacccgtccatccagttccgc
tgtgtggtgtccggctcctgcatcccgctggccttcaagtgtgaccacgaggacgactgt
ggggacaacagtgacgaggaacactgtgagagtcaccagtgtggaccaggggagttcacg
tgtgcgcggggtgtgtgtatccgcgaggcctggcgatgtgacggagacaacgactgcagg
gactggtcggatgaagccaactgtacagtgggtcaccacacctgtgaggccagtaggttc
cagtgtctcacgggccactgtatccctaagcgctgggtgtgtgacggtgatgacgactgt
caggacagctctgacgaggagcaagcgcattgcgtgggggatcgctgtaatggcttcctg
tgttccaacggcacctgtctgcctgccagcgcacactgcaacggagtacaagactgccca
gggggcgccgacgagcaacactgtgatcccctgtgtacgcgctacatggattttgtgtgt
cagaaccgagcccagtgcctgttccagtctttggtgtgtgacggcaccaaacactgcgag
gacggatccgatgaggacgtggcctacgccggctgctccactcaccctgagtttgagaag
acgtgtgacgcctacaacttccagtgtgccaacggagtgtgtgtgagcctggggtggaag
tgtgacggtatgaacgactgcggggactactctgatgaggccaactgtggctcccccact
gaggggccaggctgcacacgggacttccagtacgagtgtcgtaacgggcgctgtgtgccc
tcctggtggaagtgtgacggagagaatgactgcggagactggtctgatgaggctcagtgc
actggaggagtcacgccccacacccctgccccaggcccatcgtcctgcgcccctaaccgc
ttccactgtggctcgggagcctgtatagtcaactcctgggtgtgtgacggctacgctgac
tgtcccgatggcagtgatgaactgggctgtcccacaggcacagccaacggcacagccaac
ggcacagccaacggcacggcgacacaggccccgtggcccacccacgcccctcccctgccc
cctggccgctgcagtaagagccagttcctctgccggaagccccccacctgcatccccgac
tggcagcgctgcgacggccaccagcactgcctggacggttcggacgaagcccactgtcct
acacgagggcctctgacatgtgttaacggcacgcactgcgctgacggggaagcctgtctg
ctggacggtgagaagtgtgacggcttcatggactgctccgaccacagtgacgaggacaac
tgcacctccgactctctggtctacaagatccagaacctgcggtggacggcagacttctct
ggcgccatcaccctcacctggtccaggcctaagaacctgcccctggcttcctgctacttc
ctcatctactacaggctggtgggcacccaacagtggacctctatggacacacacagcaac
aagagcagctacaccctgtcggtgctgaagccagacaccacgtaccaggtgaaggttctg
acccagtgtctcagcaagcagcacaagaccaacgatgtgttgaccctgcgaacgcccgag
ggattgcccgacccccccagaaacctgcagctgtcatgtgacaacggagaggacggcatg
gtggaggcctcgtggagcgctccggacaaagcccacggactgatccgggagtacattgtg
gagtacagtgaaaaaggtgtggagtggttctctcagcgaagcaccggcaatggtgtggag
gtcaagaacctacagcccagcactctgtacaagtttagagtggcagcagtgacgggtcga
ggtatggggaactggactgaggttaaatccatcatccccaagaaagctctaccacccccc
tcagttatcaccgatagcatcacagaagactcgatgagcctatctttcagctttaactcc
caatatgaggtgaggcagtatgtggtggtgctgtcctgggtgtttgatgctcacgtgaag
gagagcaggaactacactgtgcgaggcagcatactgaaagctgccaacctgaccacgggg
accatctacgaggtggctgtgtgggcccagaccggtgtaggagacagccccacagccctg
tcccgccagcagaccaaaggcacccagccggagcctcccctcctcaaggctcgggccctt
aaccagagctctgtggactgcagctggactgtaaccggatcccctgcacaggtgtatggc
atcttctttgccacctccttcttggacctgtaccgcagccctcacagtgtgaacaccagc
gatagcagccggaccgtcactgtggacagtgatgagcagtacctgttcctcgtgcgggcc
atctctccctacctgggccctccctcggagtatgcggtggttaagatgattcccaacgag
cggcttcctcctcgtaacctgcacaaggtgcgcgttgagaagacccaggcgatgttgaag
tggcagcctccctacgactcccccagcgcccctctgacgtacgcggtgcacctgaaggat
gtggtgcgtaagaccgagagcagctacaagctgaccacccagaacaacacggtggagtac
tgcctcaagggcctggagcccggcggacactacagcgtctccgtccgcctgcgcaacatg
agcaaggaggccagctacacgctcaacacaatgcccctgcctgctccagaggctctgaag
atcctgacggagaaagaccacgtgttcctcttctggaagagtttggccgtgaaggagagg
agcttcaatgagagcaggggctacgaggtgcacgtgtacgacagcctgtccaactcctcc
gtgctcctgggaaacaccacagagaccttcttccggatcagcagcctgctggcaggccac
aactacaccttctctgtccaggcccgctgcctgttcaacggacagctgtgtggcgagtcc
gccctgctgctctacgaccagctgggacaaggtcccagcgaggcagtgcggagctcgggt
cagtcaggggacatggcagtagtggtggtgccggtgctgttcctgctgctgctggggctg
tgtgggggcctggtggtcctgtacctgaggcaccgccgccttcagaacaacttcaccgcc
ttcgccaacagccactacaactcccgcctgggctcggccatcttctcctctggggacgag
ctgggtgacgatgacgaagacgcccccatgatcagcggcttctcagacgatgttcccatg
gtgattgcgtag
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