Oncorhynchus tshawytscha (Chinook salmon): 112265430
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Entry
112265430 CDS
T05605
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
112265430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112265430
Membrane trafficking [BR:
otw04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
112265430
Protein recycling
Other Rab GTPase associated proteins
112265430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Rep_N
DUF2607
EST1
Motif
Other DBs
NCBI-GeneID:
112265430
NCBI-ProteinID:
XP_024298483
LinkDB
All DBs
Position
LG13:complement(60638207..60643620)
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AA seq
498 aa
AA seq
DB search
MSHGPERRGIHVDQSELLCTKGCGFYGNVAWQGLCSKCWREEYQQTRHKQIQEDHALAER
LQMEEEAAYANNHQGAAQSQPAIAPFSKFEERKTKEKSRKVNTVTKFFSPSARTPPKKDS
VPGEAQSTPSPSVSRKPLETDRNTREFIDFLKTLKPGREIFKQCRAFTESMACKRDLGAD
ELSECVQDFYQNLSDRLQTHYKGSSERVESVMDEVERYMMTRLYDDVFCPETTDDEQKDL
AVQKRISVCVGCRALHWVTIELLCVPVDEEIPEVSDNVVKAITDVIEMDSKRVPRDKLTC
ITRCSKHIFNAIKTTKKEAASADDFLPTLIYIILKANPPRLQSNIQYITRFCNPSRLMSG
EDGYYFTNLCCAVAFIEKLDGQSLNLSAEVFELHMSGQASPQRPQAAPSPPGSAAFSEMN
ERLDLLTGLGVRQERVVEGARRLESDLIDWRDVVEHKVQDVLERFPLEMHPPASSAIDAD
NVENDLLPPPLQPQLFAG
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgagccatgggccggaacgtcgtgggatccatgtggaccagtcagagctgttgtgtacg
aagggatgtggtttctatggcaatgtggcctggcagggcctctgctccaagtgctggcgg
gaggagtaccaacaaaccagacacaaacagatccaggaggaccatgctctggcagagagg
ttacagatggaggaggaggcagcatatgctaacaaccaccagggggcagcccagtcccag
cctgccattgcacccttcagcaaatttgaagagaggaaaaccaaggagaagtcacggaaa
gtcaacacagtgactaagtttttctctccctcagcaaggacaccacccaagaaagactct
gtccctggcgaggcccagtcgacccccagcccctcagtgagccgcaagcccttagagacg
gaccgcaacacacgagagttcatcgacttcctcaagacactgaaacctggcagggagatc
ttcaaacagtgccgggccttcacagagagcatggcctgcaagagggacctgggtgctgat
gagctgtctgagtgtgttcaggacttctaccagaacctgtcagaccgcctgcaaacacac
tacaaagggtcgtcggagcgcgtggagagtgtgatggacgaggtagagaggtacatgatg
acacgtctctacgatgacgtcttttgtcctgagaccacagacgatgagcagaaagacctg
gctgttcagaagagaatcagtgtgtgtgtgggttgcagggccttgcattgggtcaccatt
gagttgctgtgtgtccctgtggatgaggagattcctgaggtgtctgataatgtggtcaaa
gccatcacagacgtgatagagatggactcgaagcgtgtgcccagggacaagctgacctgc
atcacgcgctgcagtaagcacatattcaatgccatcaagaccaccaagaaggaggcagca
tctgctgatgacttcctgcccaccctcatctacatcatcctgaaggccaaccctccacga
ctgcagtccaacattcagtacatcacccgcttctgtaaccctagccgcctcatgagcgga
gaggacggatactactttaccaacctgtgctgtgcggtggccttcatagagaagctggat
ggccagtctctgaacctgagcgctgaggtgtttgagctccacatgtcaggccaggcgtcc
ccccagcggccccaggctgccccctcccccccaggcagtgctgctttcagcgagatgaac
gagcgtctggacctgctgacggggctgggcgtgaggcaggaacgcgtcgtggagggagct
cgccgcctggagagtgacctcatcgactggagggatgtggtggagcacaaagtgcaggat
gtgttggagaggttccccctggaaatgcacccccccgcctcttctgccatagacgctgac
aacgtggagaacgatctcctgcctcctcctctccagccgcagttgtttgccggctga
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