Oncorhynchus tshawytscha (Chinook salmon): 112265506
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Entry
112265506 CDS
T05605
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112265506
03036 Chromosome and associated proteins [BR:
otw03036
]
112265506
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112265506
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
112265506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
S1
S1_RRP5
HHH_3
HHH_9
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
112265506
NCBI-ProteinID:
XP_024298632
LinkDB
All DBs
Position
LG13:65199810..65233279
Genome browser
AA seq
1737 aa
AA seq
DB search
MDFIEREAEESEEEFGCPEDTEKKALKHAAANDDEEEEEENTEDQDADGNLCGLIDDGVE
EGEGEEEDEEEGNKDKEGDSDSGEEIGHRKRKRSFDDRLDDDDIDLIEENLGVKVKRQKF
RRLRDMSDDEDEEGDEDVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEEEDDEES
DIDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEE
DADEESWDRPKKQAKKRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTRV
KPAEDDELEQEAEWIYRNAFSTLTISMQENADYLDRGPTTTFSRKGPSTIQKIKEALNFM
RNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFE
QISADPDKPLADGIRPLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSK
KKMKKIKVDEDGNEQEVEEEEEEEEEQSKGPDLKLASRRDMYSICQCAGLDGLAKKFGLT
PEQFGENLRDSYQRHETEQFPAEPMELAKDYICSQFSTAEAVLEGTRYMVAMQIAREPLV
RHVLRQTFQERAKINIKPTKKGKKDVDEAHYGYSFKYLKNKPVKELNGDQFLKMFQAEEE
GLLTINICIDLIGVKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLY
PQMAKELKNKLIAEAKENIIKACSRKLYNWLKVAPYRPDQQVEEEDEELMSEAHGKGIRV
LGVAFSSSRDTPVFCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLN
SKKPHIIAIAGENRDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEA
DFRDYPPLLRQAVSVARKIQDPLVEYAQVCSSDEDILCLKLHPLQEHVVKEDLLNALYCE
FINRVNEVGVDVNRAMAHPYTQSLVQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMC
HMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAE
DANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTY
RGPNTEEIFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFC
QQDNFPELSEVWNHFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGM
TVHCRIMKIDIEKLSVDLTCRTSDLSDKNNEWKLPKDTYYDFDTETEDVKQEEEAKKKQQ
RTTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADGIYQHI
DVREEGKENAFSLGHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECNGGDRK
KMEEVLVKSKKEKPTFIPYYVSACRELPGKFLLGYQPRGKPRVEFVTVTPEGFRYRGQIF
PTVNGLFRWFKDHFQEPVAGITPSSSRTRTPASVNATPANINIADLTRAVNALPQNMTSQ
MFSAIAAVTGQGQNPNTTPAGWASSQYGYTGGSSGGGGSSSAYHVFATPAQQPIATPLLT
PSYSYTTPTPSQQQTITTPQYPSSTPQSSHGHGHRPSSSTPSSTSSSRHHRTPTPKATSH
TAVDWGKMAEQWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDATPLLDEMDR
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagggaagcagaggagtctgaggaggaatttgggtgtccagaggac
acagagaaaaaggcactgaagcatgctgcagcaaatgatgatgaggaggaggaagaggag
aatacagaggatcaggatgcagatggaaacctctgtggtctgattgatgatggtgtggag
gaaggggaaggggaggaagaggatgaggaagaagggaataaagataaagaaggtgatagt
gactctggggaggaaattggacaccgtaagaggaagagaagctttgacgaccgcttggat
gatgatgatattgatctcattgaggagaatttgggagtaaaagtgaaaaggcaaaagttc
cgtcgtttgcgagacatgtcggatgatgaggatgaggagggagatgaagatgtcagggag
gcccatgagaaggacatgatagcggatgagatcttcatggggacgggagcggatgagggt
gaggcattggatgtgcctttgcatcccggggaggatgaggaggaggatgatgaagagtct
gatatcgatgactttattgtggatgatgacggacagcccttgaaaaaacccaagtggagg
aagaagctgccaggatatacagatgcagcccttcaggaggcccaagagatattcggaggg
gactttgactttgccgagtttgacactgaagcctatgaagatgcagaggaggaggaggag
gatgcagatgaagagtcatgggaccggcccaagaagcaggccaagaagagggtgggtcga
cgcagtatctttgagatctatgagcctagcgagctggagagcagtcacatgacggaccag
gacaacgagatccgctccactgacatgccagagaggttccagttacgctccactcgtgtg
aagccagcagaggatgatgagctggaacaggaggctgagtggatctataggaatgccttc
tctactctcaccatctccatgcaggagaacgcagactatttggacagaggtccaaccact
actttcagcagaaaaggccccagcaccatccagaagattaaagaggctttgaatttcatg
agaaaccaacactttgaggttccgtttatagcattctacaggaaagagtatgtggagcct
gaactcaatatcaatgatctgtggaaggtttggcagtgggatgagaagtggacccagctg
aaaacccgcaaacagaacctaagacgcctgttccagaagatgcagggataccagtttgaa
cagatctcagctgacccagataagccactggctgatggcattcgaccactagacacttca
gatttagagaggttgaaggatgtccagtctagtgatgaactgggcgacgtctacaaccat
ttcctgctgtactatggccgagatattccaaagatgcagaatgcagccaggtccagcaag
aaaaagatgaagaagatcaaagtggatgaagatggtaatgagcaggaagtagaggaggag
gaagaggaagaagaggagcagtcaaaggggccggacctgaagcttgcatctcgcagggat
atgtacagcatctgccagtgtgcaggactggatggcctggccaagaagtttggtctgact
ccagagcagtttggagaaaacctacgtgacagttaccagcgtcacgagacggagcagttt
cctgctgagcccatggagctggctaaggactacatctgcagccagttcagcacagcggag
gcagtactggaggggactcgctacatggtcgccatgcagatcgcccgggagcctctagtc
agacatgtgctccgacagacgttccaggaaagagccaagatcaacatcaaacccaccaag
aagggaaagaaggatgtggatgaggcccattatggttactcctttaagtatctgaaaaac
aagcctgtaaaggagctgaatggagaccagttcctcaagatgttccaggcagaggaagag
ggcctgctcaccataaacatctgtattgacctgattggagtgaaggggtacggaggtgac
caggcgtactatgaagagataaagcagttttactacagagatgagttcagccaccaggtt
caggagtggaacagacagcgcactctggccattgaacgatccctcaaacagttcctttac
ccgcagatggcgaaagagctgaagaacaaacttattgcagaagcaaaggagaacatcatt
aaggcctgcagcaggaagctgtataactggctgaaggtggcgccctatcggcctgaccaa
caagtggaggaggaggatgaggagctcatgtctgaggcccacggcaaagggatccgcgtg
ctgggagtggccttctcatccagcagagacaccccagtgttctgtgccctggtgaatggt
gacggagaggtgggggatttcctcaggcttccttacttcctgaagaggaggaacgcatgg
agggaggatgaaagggagaaaaagatccacgatattgaaaccctgaagaagtttctgaac
agcaagaagcctcacatcatcgctatagctggggagaacagggacgcccagatggtgatt
gaggacattaaacgcactgccagtgagctggagcaggagtcctccttccccaccatcggg
gtggaactggttgataatgaactggccatgctctacatgaacagcaagaagtcagaggca
gatttccgggactacccccctctcctgagacaggctgtgtctgtggccaggaagatccag
gaccccctggtggagtatgctcaggtgtgcagcagtgacgaagacatcctctgcctcaag
ttacaccctttgcaggagcatgtagtgaaggaggacctgctgaatgctctgtactgtgag
ttcatcaaccgggtgaatgaagtgggtgtggatgtgaaccgggccatggcccacccttac
acccagagcctggtgcagtacgtctgtggcctggggcccaggaagggatcccacctgctc
aggatcctgaagcaaaataacactcgtctggaaaaccgcactcagctggtcaccatgtgt
cacatgggccccaaggtcttcatcaactgtgctggtttcatcaagattgacacagcttca
cttggagacagtactgactcctatattgaggttctggatgggtcgcgggtgcacccagag
acctacgagtgggcaaggaagatggccgtggatgccctggagtacgatgagtcagcggag
gacgccaacccagccggagcactggaggagatcctggaaaatccggagcggctcaaagac
ctagacttggatgcctttgctgaggagctggaaagacagggctatggtaacaagggcatc
accctgtatgacatccgtgctgagctgagctgcaggtacaaagacctgaggtccacctac
agaggacctaacacagaggagatcttcaacctgctcaccaaggagacaccagagaccttt
tacatcggtaaactgatcaccagtgtggtgacaggcattgctcaccggcgcccccagggg
gagagttatgaccaggccataaggaatgatgagacaggtctgtggcagtgtcctttctgt
cagcaggataacttccctgagctcagcgaggtgtggaatcattttgacagtggctcctgc
cctggccaagctattggggtccgctgtcgcatggacaacggagtcaccggctttatccct
accaagttcctcagtgacaaagtggtcaagcaccctgaagaaagggttaaggtgggcatg
acagtgcactgcaggatcatgaagattgacattgagaagctcagtgtggatctgacctgt
cggacgtcagacctgtcggataagaacaatgagtggaagcttcccaaggacacctactac
gactttgacactgagacagaggatgtgaagcaggaggaggaggccaagaagaaacagcag
agaacaacctacatcaagagggtgatagcccacccatcgttccataacatcaacttcaag
caggcagagaagatgatggagtccatggaccagggagatgtaatcatcaggcccagcagt
aagggagagaaccacctgactgttacttggaaggttgctgatggcatctaccagcacatt
gacgtacgagaggagggcaaggagaatgccttcagcctgggacataccctgtggatcaac
actgaggaatttgaagatctggatgaaattacagccagatacgttcaaccaatggctgcg
tttgctcgcgatctacttggtcacaagtattttcaagaatgcaatggtggagaccgaaag
aaaatggaggaggtcttggtgaaaagcaagaaggaaaagcctacattcatcccctactat
gtgtctgcctgtagagagctgccagggaagtttctgcttggttaccagccccgcggaaaa
ccaagggttgagtttgtgactgtcacgcctgaggggttcagatacagaggccagattttt
cccacagtcaatggactcttccgctggttcaaagaccatttccaggagccagtggcaggg
attactcccagcagcagtagaacacgaaccccagcctctgtcaatgccacgccagccaat
attaacattgcagatctgactcgtgcagtgaacgccctccctcagaacatgacctctcag
atgttcagtgccattgccgcagtaacgggccagggccagaaccccaacaccacaccagcc
ggatgggcatccagccagtacggctatactggtggcagcagcggcggaggggggagcagc
agcgcctatcatgtgtttgccacaccagctcagcagccgattgctactccccttctgacg
cccagctattcatacaccacccccacccccagccagcagcagactatcacaactccccag
taccccagcagcactccccagtcctcacacggacatggacaccgcccttcctcctccaca
ccatcatcaacatcctcctcccgccaccacaggacaccaacaccaaaggcaacttcccac
acagcagtggactggggaaagatggccgagcagtggctccaggagaaagaggcagagcgc
aagaagacgaggcccagaatgaccccacgaccttctcccagccccatgatcgagagcacg
cccatgtccctcgctggagacgccacaccgctgctggatgagatggatcgctag
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integrated database retrieval system
