Oncorhynchus tshawytscha (Chinook salmon): 112265521
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Entry
112265521 CDS
T05605
Name
(RefSeq) serine/arginine-rich splicing factor 1B
KO
K12890
serine/arginine-rich splicing factor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112265521
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112265521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112265521
Spliceosome [BR:
otw03041
]
Common components
Common spliceosomal components
SR proteins
112265521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Nup35_RRM_2
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
112265521
NCBI-ProteinID:
XP_042152139
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All DBs
Position
LG13:complement(65655605..65661162)
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AA seq
253 aa
AA seq
DB search
MSGGVVRGPAGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFIEF
EDPRDADDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGFGGGGGGVGGAPRGRYGPPSRR
SEYRVIVSGLPQSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNT
KFRSHEGETAYVRVKVDGPRSPSYGRSRSRSRSRSRSRSAASRSRSNSRGGGTRGGRGSP
RYSPRHSRSRSRS
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggaggcgtcgtgcgaggccctgcaggaaataacgattgtcgtatttacgtcgga
aatctaccccctgatattcgcaccaaagatgtcgaggacgtgttttacaaatacggagcg
attcgcgacatcgacttgaaaaatcggagaggaggacctccctttgcctttatcgaattt
gaagatcccagggatgccgacgatgcagtgtacggacgagacggctatgactacgacggt
tatcggctgcgagttgaattccctcggagcggcaggggtggggggagaggcggctttggt
ggtggtggtgggggggttggtggcgcccctagaggcagatacgggccgccatccagacgc
tccgagtacagggtcattgtctctgggcttcctcagagtggcagctggcaggacctcaag
gatcacatgcgtgaggctggggatgtatgttatgctgatgttttcagagatggaactggg
gttgtggagtttgtgcgcaaagaagacatgacctacgccgttcgaaaactggataacacc
aaattccgatctcacgagggagagaccgcttacgttcgcgtgaaagtagatggtccccgc
agcccgagctatggaagatcacgttccaggagccgcagtcgaagcaggagccgcagcgca
gccagtcgcagccgcagcaactctcgcggtggtggtacccgtggtggcagaggatctcct
cgctactctccacgccatagccgctctcgctcccgttcctaa
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