Oncorhynchus tshawytscha (Chinook salmon): 112265533
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Entry
112265533 CDS
T05605
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03030
DNA replication
otw03420
Nucleotide excision repair
otw03430
Mismatch repair
otw03440
Homologous recombination
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112265533
03420 Nucleotide excision repair
112265533
03430 Mismatch repair
112265533
03440 Homologous recombination
112265533
03460 Fanconi anemia pathway
112265533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112265533
03032 DNA replication proteins [BR:
otw03032
]
112265533
03400 DNA repair and recombination proteins [BR:
otw03400
]
112265533
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112265533
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112265533
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112265533
MMR (mismatch excision repair)
112265533
DSBR (double strand breaks repair)
HR (homologous recombination)
112265533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
112265533
NCBI-ProteinID:
XP_024298675
LinkDB
All DBs
Position
LG13:66091299..66134289
Genome browser
AA seq
605 aa
AA seq
DB search
MLTKGAIEALTKCSNDLQNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLSTQLN
PMAEDNRLAPNCICQLKRSVTNILKDGRRVVVILDMEVVKSADEVAGKIGEPQPYVEGQS
KTPQSAPNPSVHPLQPQNGIDGSMNKGPSRAFGGKKAMPPSAMPSTPGGSSKVVPIASLN
PYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSIIET
GKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADLQAR
EKDTILDVIGVCKSVSDVTRLNTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAETFDGSG
QPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMAGQSLTEART
GGGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKKVVD
QQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKD
SNEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMNIRK
MASAQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgacaaagggagcgatagaggccctaaccaaatgctctaatgatttacaaaacccc
atacttcaattagtgaacatccgtaaaattgatggaggcagtggaccagcccgctttcgt
ctgatgatgagtgatggacagcactcaatgtcttcgttcatgctctccacccagctcaac
ccaatggctgaggacaaccgactagccccaaactgtatctgtcagctgaagaggagcgtg
accaatatcttaaaggatggacggcgtgtggtggtcatactggacatggaggtggtgaag
tctgctgatgaggtggctgggaagatcggagagccccagccttacgtggaaggtcagagt
aaaaccccacagtcagcccccaatccctcagtccaccccctgcaaccccagaatggaatt
gatggctccatgaacaaaggtcccagcagagcgtttggggggaagaaggccatgcctccg
tctgccatgcccagcactcctgggggatcctccaaagttgtgcccatcgccagcctcaac
ccctaccagtcaaagtggaccatccgagcccgtgtcaccaacaagagcggaatccgcacc
tggagcaactctcgtggggacggcaagctgttctctatggagattgtggatgagagtgga
gagatcagagtgactgcctttacccaggaggtggacaaattctacagcatcatcgagact
ggcaaggtgttctacatctccaagggatcgctgaagatcgccaacaagcagtactcatcc
ctgaagaatgactatgagatgaccctgaatggagagtccaccatcattccctgtgaagac
acccaggacgtacccatggtgcagtgcaactttgtctccatcgccgacctgcaggcccga
gaaaaggacaccattttggatgtgattggagtgtgcaagagcgtgtccgacgtgacccgc
ctcaacaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatggaccagtct
ggtaaactggtggaggtcaccctgtggggagaggaggcagagacctttgatggctctggg
cagcctatcctggccatcaaaggggccaagctgtcggactatgggggcagatctctatct
gcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatacaagctgcgg
ggctggtatgacaaggagggccactctatggctggccagtctctgacggaggcgaggaca
ggtggaggaggaggagggaacaccaactggaagaccctggcagacatcaagacggagcac
cttggacacggagacaaggcagactacttcagctgcatcgccaccatagtgtacatccgt
aaggagaactgtctgtaccaggcgtgccctagtcaggactgcaataagaaggtggtggac
cagcagaacggcatgttccgctgtgagaagtgtgacaaagagttccccaacttcaagtac
cgactcatcctctctgccaacatagcagactacggggacaaccagtgggtgacctgcttt
caggagagtgctgaagccattttgggacagaacgctgcttacctagggcagctcaaggac
tcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacgttcgttttc
cgtaacagagtcaagctggagacctacaatgacgagtcccggatcaaggccacggtgatg
gaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaacatcaggaag
atggcttccgcccaataa
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