Oncorhynchus tshawytscha (Chinook salmon): 112265540
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Entry
112265540 CDS
T05605
Name
(RefSeq) protein Smaug homolog 2
KO
K27396
protein Smaug
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112265540
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112265540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
PHAT
SAM_2
Motif
Other DBs
NCBI-GeneID:
112265540
NCBI-ProteinID:
XP_042150880
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All DBs
Position
LG13:66840483..66864468
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AA seq
664 aa
AA seq
DB search
MMFRDQVGILTDWFKGWNECEQTVALLSLLKRASRTQARFLHICLEHWLADCTEIHILEA
EANNADIVSQWHLEPMEKAVSLLLSHLPLLQPRNSEAKCEYMKLLQKVLSHTIESSLFVE
ESRQLLSYALIHPATTLDDRTSLAMWLNHLEEHLSAGYPAPSRPPSGPYHPRQGSDEWPG
SAEVLDPGHGWLDKPPSSSSSPAGQNGHMSFQGGMPSPINSNNAGMGQMGQPSPLKRSSS
LIPSSSQVCGADWLSQDDLGGRQAFDHAPLSPQSSVASSGSEQTEDQGSRNTFQEDGSGM
KDVPMWLKSLRLHKYAALFSQMTYEEMMILTEHHLESQNVTKGARHKIALSVQKLRERPS
VLKSLEKDILEGGNLRNALQELQQIITTPIKVYSYSPPSVSHRDMEGSGSPSDHTNPGED
KDLAQEGFQPHNPPPCDGESSVTPISDGDIAGQFTRVMGKVCTQLLVSRPDEENISCYLQ
LIEKCLTHEAFTETQRKRLVAMLDMPVYRQKGWAYGSNSLPTAGSVSAGGLARRGQRAFQ
MPPRGLPAGRMGLLSPGGIGVASPRHTLTSPTLPGQGRQVSHRMGSYMFFVPEWGQHTML
QSVFHCPCNTYSLSTLASQTMLLFQQHECQVPGADLEINPTLESLCLSMTEHALGDGIDR
TSTI
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgatgttccgagaccaggtgggcatcctgacggactggttcaagggctggaacgagtgt
gagcagacggtggcgctgttgtccctgctgaagagagcatctcgtacccaggcccgcttc
ctgcacatctgcctggagcactggctggcagactgcactgagatccacatcctggaggct
gaggccaacaatgcagacattgtgagccagtggcacctggaacccatggaaaaggcggtg
tccctgctgctgtcccacctgcccctgctgcagccccgcaacagtgaggccaagtgtgag
tacatgaagctgctgcagaaggtgctgagccacaccatcgagagcagtctgtttgtggaa
gagagtagacagctgctgtcctacgccctcatccacccggccaccaccctggacgaccgc
acctcgttggccatgtggctcaaccacctggaggagcacctctccgcgggctacccagcg
ccttcccggcccccctctggcccctaccacccccgccagggctcagatgagtggccgggc
tcagcagaggtcctggaccctggccatggctggctggacaagcccccctcctctagctcc
tcccctgcagggcagaacggacacatgtctttccagggtgggatgccctcgcccataaat
agcaacaacgcaggcatgggtcagatgggccagcccagtcctctgaagaggtcctcgtcc
ctaatcccctccagttcccaggtctgtggcgcagattggctgagccaggacgacctgggg
gggcgacaggcctttgaccacgcccccctgtccccccagagtagtgtggcatcctcaggc
agcgagcagactgaggaccagggctccagaaacaccttccaggaggatggcagtggcatg
aaagatgtgcccatgtggctgaagagcctccgtcttcataagtacgcagcacttttctcc
cagatgacttatgaggagatgatgattctgacagagcaccacctggagtcacagaatgtg
accaaaggtgcgcggcacaagatagccctgagtgtccagaagctacgggagaggccaagc
gttctcaaatctttagagaaggatatattggaggggggcaacctgcgtaatgccctacag
gaactacagcagattatcaccacccctatcaaggtctacagctacagccctcccagtgtt
tcccacagagatatggaggggagtggatccccctcagaccacaccaaccctggggaggac
aaggacctggcccaggagggcttccagccccacaacccccctccctgcgacggagagtcc
tcagtcacacccatctcagacggcgacattgctgggcagttcacgcgtgtcatgggtaaa
gtgtgcactcagctactggtgtccaggccggacgaggagaatatcagctgttacctgcag
cttattgagaaatgtctgacacatgaggctttcacagagactcagaggaagaggctggtg
gccatgctggacatgcctgtgtaccgacagaaaggctgggcatatggttccaactccctc
cccacagcaggctctgtgagtgctgggggtctggcacgtagggggcagagggcattccag
atgccccctcgtggcctccctgccgggcgcatggggctcctgagtccaggtggcattggg
gttgcctccccacgccacaccctcaccagccccacactgccaggccagggcagacaggtc
agtcataggatgggatcatatatgttctttgtcccagaatgggggcagcacaccatgctt
caatctgtattccactgtccttgcaacacatactccctgtccacactagcttcgcaaacc
atgctcctgttccagcagcacgaatgccaagttccaggtgcagacctggagatcaacccc
acgctggagtcactgtgcctcagtatgacagagcatgccttaggagatggaattgaccga
acatcaacaatttga
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