Oncorhynchus tshawytscha (Chinook salmon): 112265572
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Entry
112265572 CDS
T05605
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112265572
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
112265572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
112265572
NCBI-ProteinID:
XP_024298758
UniProt:
A0A8C8JIY7
LinkDB
All DBs
Position
LG13:complement(68241465..68275355)
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AA seq
2114 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWRRFVWQGPTSSPILFPVTEEDPILCSFSRC
LAADVLSVWRRHHTPGRRELWLFWWGDDPSFAELIHHDLSSEEEGEWESGLSYECRTLLF
KAVHNLLERCLMNRSFVRIGKWFVKPYEKDEKPISKSEHLSCAFTFFLHGDSNVCTSVEI
AQHQSVQRLSEEHLSLAQQNASPLQVILSPYGLNGTVTGQSFKMSDHPTQKLIEEWRQFY
PISPSAKDRPEDKMEDADWEDDSLAAVEVLVAGVRMVYPACLVLVPQSDLPALAPQGSAN
PSAILCEGQGTHRDHAMSSVTLTPPTSPEEAQTDHQAAQRWLKLCLTVDGFSSNSSGIHG
SKIPRRLAAQVVESVWQECTTNRAQSKRKFATLTNGTCEEEEGDKTGVWDFVESSHRAHC
NCSRHKNQKQRLGSTSGNPPSVGKPPQPPPKHKLGEKLEKGEKQQKRPQTPFHHRSYVFE
EQAMEPRRLCIRTQDEGPYPNLHHIDTAPSKAPMLHTHGTSQDLAGSPQPPPLSPHPCEH
GEEDPGAMKSSSTPIHQHLYPPSSEPCLLPQKTLSDLPLPFPHTYPESLEPTAYVGSAIN
PNEDSAHNPWKYFNLPRKKASDFLTPLLPVDKLQDDSGGGGGQENIVSVTELMSGSGRPL
KVSDDLVRTYTQRRNSHLAAAMADEDHEEEPDPYAFVEGDEEFTFTDKKDKPGSERETSK
RHKGDDGSGTSADDGQGAAGGKPIPSTSLIHETDLAVSINDLDNLFNSDEDELAPGSRRA
GVHGDKFGSKEHKTSNLDPLSCISSADLHKMFPTPPSLEQHIMGYSPMNTGGKDYGGLEG
GLGLTLLDGSQFSSHYKMEVEEGFCSPKPSEIKDFSFVYKSEACKAFTGCSMFAPLKMLP
SQCMMPIKLPEDCVYTPSWTMGKLELIPPVPSMGLLTKDSNIPSVEPDYQSYTPQTHTPF
MSNSAPPSNSGTGILPSPATPRFSAPTPRTPRTPRTPRGPASVQGSLKYDNSDLYSPAST
PSTCRPLSSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCVCVCNMNIRGADV
GVYLNDNGEAQYPCTCGFSAVVNRRYGSSAGLFLEDELDLVGRDSDAGRDSERRFQELHA
ASLHRTGNPKERPPDELILLLQDQCTNPFSPMAGVEYPRALSSGPSRFCLRVEERDCYND
CYMALEHGRQFMDNMSGGKVDEALVKSTCLHNWPKRKAAEVSRLFSQDVLRVLLSLQPVL
QDAIQKKRSIRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGYEYDFVVLSP
FGLPYWEKLLLDPFGSHRDVGYVVVCPENEALLRGAKSFFKDLTAVYEACRLGQHRPICK
THADGILRVGTAEGRNLAEQPLSDWFLKMASSNGNSEAFSKLKLYAQVCRHDLAPYLAGQ
SLDSSLLNQRSPTVASPQSSSSQSPCSTTTPSSVPQSSTSSSSAQPTNSTPPSSTIGSQA
VGGIGGVGMPSAKPSSYTPYGTSGLQGSVSQNGPQSGAQTTGETGPTANQPQATTEPVET
TLERDKVGVPTDGESHAVTFPPAIVVYIVDPFSYEDGERDTHSSVWTLGLLRCYVEMLQF
LPPHIRNSVSVQIIPCQYLLQPVRIEERHLYGQHLKSLAFSVFTQCRRPLPSNTNIKALT
GFGPGLAIDMALRSSERPECLRLYTPPFILAPIKDKQTELGETFGEASQKYNVLFVGYCL
SHDQRWLLASCTDQSGELLETCIISIDVPNRARRKKGSARRLGLQKLWEWCLGLVQVTSL
PWRVVIGRLGRIGHGELRDWSILLSRRNLQSLSKRLKETCRMCGISAADTPSILSACLVA
MEPQGSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPTSAMVQVNNATT
EQNLDIAFNPINPDGSDGMGIFDLFDNDMVDPDLINILPNSPTTSPVHSPGGHYHQGGDG
SKGQSTDRMESHEEALNILQQPMALGYLISTAKAGPLPDWFWSACPQAQNQCPLFLKASL
HLHVSSVQSDELLHSKHSHPLDSNHTSDVLRFVLEQYNALSWLTCDPATQDRRSCLPVHF
VVLNQMYNFIMNML
NT seq
6345 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatgttttgtaccaaacggggccagtttagaggactgccactccaacctattt
tgcctggctgacctgactgggataaaatggcgacgttttgtgtggcaggggcccacctcc
tcgcccatcctctttcccgtgacagaggaagaccccatcctgtgcagcttcagccggtgc
ctggcggccgatgtgctaagtgtgtggcggaggcaccacaccccgggccgccgtgagctc
tggctcttctggtggggggacgaccccagcttcgccgaactcatccaccacgatctgtca
agtgaagaggaaggcgagtgggagagtgggttgtcctacgagtgccgcacactcctgttc
aaagctgtacacaacctgctggagcgttgcctcatgaaccgtagctttgtccgtattggc
aagtggtttgtcaagccctatgagaaggatgagaagcccatcagtaagagtgaacacctg
tcgtgtgcgttcaccttcttcctgcacggggacagtaatgtgtgcacgagcgtagagatt
gcccagcaccaatctgtccagcgactgagtgaagagcacctgagcttggcacagcagaat
gccagccccctgcaagtcatcttgagtccatatggtctgaacgggacggtcacgggtcag
tccttcaagatgtctgaccaccccacccagaaactcattgaggagtggaggcagttctat
cccatcagccccagcgccaaggaccgccccgaggacaagatggaggatgcagactgggag
gacgactcactagcagccgtggaggtccttgttgctggagtgaggatggtgtaccctgcc
tgtctagtactggttccccagtcagacctccctgccctagccccccagggctcagccaac
ccctcagccatcctgtgtgagggccaagggacccacagagaccatgccatgtcctctgtc
acccttactcctcccacatcaccagaggaggcccaaacggatcatcaggcagcccagagg
tggttaaagctgtgcttgacagtggatggtttcagctccaacagcagcggtatccatggc
agcaagatcccccgtaggctggctgcccaggtggtggagagcgtgtggcaggagtgcact
accaaccgggcccagagcaagaggaagtttgctacattgaccaatggcacctgtgaggag
gaggagggggacaaaacgggagtatgggattttgtggagtcatcgcatagggcacactgc
aactgttcaaggcataaaaaccagaagcaacgattaggcagcacctcaggaaacccccca
tcagtgggcaagcccccacagccgccgcccaaacacaagctgggcgagaagttggagaag
ggggagaagcagcagaagaggccccagacaccctttcaccaccgcagctatgtgtttgag
gagcaggccatggagccccggaggctgtgtattagaacccaggatgagggaccctacccg
aacctgcaccacatagacacagccccttccaaagcccccatgttgcacacccacgggacc
tcccaagacctggctggctccccccagcccccacctctcagcccccacccctgcgagcac
ggggaggaagaccctggggccatgaagagctcctccacgcccatccaccaacacctctac
cccccctcctctgagccctgcctgctgcctcagaagaccttgtctgatctgcccctgcct
ttcccccatacctaccctgaatccctggaacccactgcatacgtgggctcagccatcaac
cccaacgaagactcggcccacaacccctggaagtacttcaacctgccacggaagaaggcc
tcagacttcttgacaccactgctgcctgtggacaaactacaggatgactctgggggagga
ggagggcaggagaacattgtctctgtcacagagttgatgtctggctctggcaggcctttg
aaggtgtctgacgacctggtgagaacctacacccagaggaggaacagccacctggcggct
gccatggctgacgaggaccatgaggaggagccagacccctacgccttcgtggagggagac
gaggagttcaccttcactgacaagaaggacaaaccaggatcggagagagaaaccagcaag
agacacaagggtgacgatggcagtgggacttcagcagatgatggtcagggtgcggccggt
gggaagcctataccctccaccagcctcatccatgagacagacctggctgtgtccatcaac
gatctggacaacctcttcaactcagacgaagacgagcttgcgcctggatccaggagagca
ggagtacatggagacaagtttggcagtaaggaacacaaaacatcaaatctggaccctctg
tcctgcataagctctgctgacctgcacaagatgttccccacccccccctctctggaacag
cacatcatgggctactcccccatgaacactggggggaaggactatggtggcctggagggt
gggttgggcctcactctgctggatgggagccagtttagcagccactacaagatggaggtg
gaggaaggcttttgcagccccaagccttctgagatcaaggacttctcgtttgtttacaag
tcggaggcgtgcaaggcattcacgggctgctccatgtttgctccgctgaagatgctgccc
agtcagtgtatgatgcccatcaagctgccagaggactgtgtttacacacccagctggacc
atgggcaaactggagctcatacccccagtgccatccatgggcctcctcaccaaagacagt
aacatccccagtgttgagccagactaccagagctacacacctcagacccacacgcccttc
atgtccaacagtgccccacccagcaacagcggcacgggcatcctgccctccccagccaca
ccccgcttctccgcccccaccccacgcactccccgtaccccacgcaccccaagagggcca
gccagtgtccagggatcgctcaaatatgacaactctgacctctactcgcccgcctccacc
ccttccacctgccgacctctcagctcagtggagccagccaccgtgccctccatccctgag
gcccatagcctctacgtcaccctcatcctctccgagtccgtcatgaaccttttcaaggac
tgtaactttgacagctgctgcgtgtgcgtgtgcaacatgaacatccgtggtgcagatgtg
ggcgtgtatcttaatgacaatggcgaggcccagtacccctgtacctgcggtttcagcgcc
gtggtcaaccgccgctacggcagctcggctgggctcttcctggaggacgagctggacctg
gtggggcgcgactcagacgctggccgggactctgagaggcgtttccaggagctgcacgct
gcctcccttcacaggacaggcaaccccaaagagaggcccccagacgagctcatcctgctg
ctgcaggaccagtgtaccaacccattctcccccatggctggggtggagtaccccagggct
ctgtcctcaggcccctctcgcttttgtctacgggtggaggagagggactgctataacgac
tgctacatggctctggagcatggccggcagttcatggacaacatgtcaggaggcaaggtg
gacgaggcactggttaagagtacgtgtctacacaactggcctaaacgcaaagctgcagaa
gtgagcaggctgttctctcaggacgtgctgcgggtgttgctctccctccagcctgtactc
caggatgccatccagaagaagaggagcatacggtcctggggagttcagggacctctcacc
tggcagcagtttcacaagatggccggcaggggatcctacggcactgacgagtctccagag
cccctccccatccctaccttcctggtggggtatgagtatgactttgtggtgctgtcgccc
ttcggcttgccttactgggagaagctgctgctggaccccttcggctcccacagggacgtt
ggatatgtagtcgtctgtcctgagaacgaggctctgctccgcggtgctaagagcttcttc
aaggaccttacggccgtgtacgaggcctgtcgactgggtcagcacagaccaatctgtaag
actcatgcagatggcatattgcgggttggtacggcagaaggcaggaacctggcagagcag
cccctcagtgattggttcctcaaaatggccagcagcaacgggaacagcgaggccttcagc
aaactcaaactctacgcccaagtgtgccggcatgacctggctccatacctggctgggcag
tctctggacagctctttgttgaaccagcgcagccccactgtggcctctccccagtcctcc
tcctcccagtccccctgctccaccaccaccccctcctcagtcccccagagctccaccagc
agcagcagtgcccagcctaccaacagcaccccaccctcctccaccataggctcccaggca
gtgggagggatagggggggtaggaatgccctcagccaagcccagctcctacacaccatac
gggacatcaggcctgcagggcagtgtctcccagaacgggccccagtcgggtgctcagacc
acaggagagactggccccactgccaaccagccccaggccaccactgagcccgtggagacc
acgttggagagagataaggttggtgtccctacagacggagagtcccatgcagtgacgttc
cccccggccattgtggtctacatcgtggaccccttcagctacgaggacggggagagggac
acccactccagtgtgtggacgctgggtctgctgcgctgctatgtggagatgctccagttc
ctgccgcctcacatcagaaactctgtgtctgtgcagatcattccctgccagtacttgttg
cagccagtgcgcattgaggagcgccatctctatggtcagcacctcaagtccctggccttt
tcggtgttcacccagtgcagacggcccctccccagcaacaccaacatcaaggctctgacg
ggcttcggccctggcctggccattgacatggcactgaggagctccgagaggccggagtgt
ctgcgtttgtacactccacctttcatcctggcgcccatcaaggacaagcagacagagctg
ggggagacgttcggagaggcctctcagaagtacaatgtgctgtttgtgggctattgcctg
tcgcatgaccagcgctggctcctggcctcctgtactgaccaatcaggagagctgctggag
acatgcatcatcagcattgacgtgccaaacagggctcggaggaaaaagggttcagccaga
cggctgggcctgcagaagctgtgggagtggtgtctaggcttggtacaggtgacatcactt
ccctggagggtggtgattggccgcctgggcaggattggccacggagagttacgagactgg
agtattttgctgagcaggaggaacctgcagtctctcagcaagcgcctcaaggagacctgc
aggatgtgtggcatctctgccgcagacactcccagcatcctcagcgcctgcctggttgcc
atggagccccaaggctcctttgtcatcatgccagactctgtgtcgacaggctcagtgttc
ggccgcagcaccactctgaacatgcagacgtcccagctgagcactcctcaggacacgtcc
tgcacccacatcctggtgttccccacctcggcaatggtgcaggtcaacaacgccaccacc
gaacagaacttagacatcgccttcaaccccatcaaccctgatggttcagatgggatgggc
atctttgacctgtttgataatgatatggtggaccctgatctcatcaacatcctgcccaac
tcccccaccacctcccccgttcactcccccggtggacactatcaccaggggggagacggc
agcaagggccagagcacagatcgtatggagtcccacgaggaggccctgaacatcttgcag
cagcctatggccctgggctacttaatctccacagccaaggctggccccctgcctgactgg
ttctggtccgcttgcccccaggcacagaaccagtgcccactgttcctcaaggcctccctg
cacctgcacgtgtcctcggtccaatcagatgagcttctccacagcaaacactcccaccct
ctggactccaaccacacctcagatgtgctcaggtttgtgctggagcagtacaatgccctc
tcctggctgacgtgtgaccctgccactcaagaccggcgatcctgtctccctgttcacttt
gtggtgctcaatcagatgtacaactttatcatgaacatgctctga
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