Oncorhynchus tshawytscha (Chinook salmon): 112265586
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Entry
112265586 CDS
T05605
Name
(RefSeq) spastin isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112265586
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112265586
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
112265586
Membrane trafficking [BR:
otw04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
112265586
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
112265586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_22
AAA_5
TIP49
Vps4_C
Mg_chelatase
IstB_IS21
AAA_16
AAA_14
DUF815
AAA_24
nSTAND3
RNA_helicase
NPHP3_N
AAA_2
MIT
Motif
Other DBs
NCBI-GeneID:
112265586
NCBI-ProteinID:
XP_024298803
LinkDB
All DBs
Position
LG02:60753270..60781092
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AA seq
596 aa
AA seq
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MSSPGGRGSRKKRGPAGSPPDGGATCDQVSLHKRNLYYFSYPLLALFAVLRVLVLHFGEL
FAWLCQRMSRAMAARPKQRAADEHANKVCEQDIGEQIRNHHKQAFEYISVALRIDEDDKV
HKEQAVQWYKRGIAELERGIAIEVAENGEKYERDKRLQAKMITNLIMAKDRLELLEKLRS
GPAQRDIYAESSNQSYHNGYLRSVSGAVPKKRDSLTTHSSHSLPRPKHTPKKTLPAGHGG
LQRSPSFIGPSSSHTQHRLVPQSNRNKSKTGNRQNCKPTTTPTSMSPLKKRDMKNLKNVD
SKLANLILSEIIDSGSSVRFEDVAGQELAKQALQEIVILPALRPELFTGLRAPARGLLLF
GPPGNGKTMLAKAVAMESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFID
EIDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFA
KRVYVALPTEDTRLKLVKNLLGKHGNPLTQKELSQLARMTEGYSGSDLTSLAKDASLGPI
RELRPEQVRNMAANEVRNIRFSDFVESLKKIKKSVGPQTLDLYVRWNKDYGDTTGA
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagttctccgggaggaagaggcagcagaaagaagcgaggccctgcagggtccccgccc
gacggaggggccacctgcgaccaggtgtcactacataaacgaaatttgtattacttctca
tacccactgctggcgttgtttgcagtgctccgtgtcctcgtattgcattttggcgaactc
ttcgcctggctgtgccagcggatgtctcgtgctatggctgcgagacccaaacaacgggca
gcagacgagcatgcgaacaaggtgtgcgagcaggacatcggcgagcagatccgaaaccac
cacaaacaagcattcgagtacatctcagtggctctgagaattgacgaggatgacaaagtg
cacaaggaacaggcagtccagtggtacaaacgcggaatcgcagagctcgagaggggcatc
gcgatcgaggtagctgaaaacggcgagaaatatgaacgagataaacgtctacaggccaag
atgatcactaatctgatcatggcaaaggatcgcctggagcttttggaaaagctgcgttca
gggccagctcagagagacatctatgcagagagctcaaaccagtcataccataacggttat
ctacgctcagtaagtggagccgtacccaaaaagagggactccctgactactcactccagt
cactccctcccacgaccaaagcatacgccaaaaaaaaccttgccggcaggtcacgggggc
ctccagcgctcccccagcttcattgggccctccagcagtcacacacagcacagactggtc
ccccagtccaacagaaacaagagtaaaacgggcaaccggcaaaactgtaaacccaccacc
actcccacatccatgtccccactgaagaagagggatatgaagaacttgaagaatgtggac
agcaagcttgccaacctcatcctcagcgagatcatagacagtggctcatctgtgaggttt
gaggacgttgctggccaggagctggctaagcaggccctacaggaaatagtcatcctgcct
gcactaagaccagagttgtttacaggcttgagggctccagcacgaggccttctgctgttc
ggtcctcctggcaacggaaagacgatgctggctaaagcagtggccatggagtccaacgcc
acattcttcaacataagtgcagccagcttgacctcgaaatatgtgggggagggagagaag
ctggtgcgagctctgtttgccgtcgccagagaactgcaaccctcgatcatcttcatagat
gagatcgacagtctactctgtgaaaggagagagggagagcatgatgccagcagacgactg
aagacagagttcttgattgaatttgatggggtgcaatctggtggggatgaacgggtgttg
gtgatgggagccaccaacaggcctcaggagctggacgaggctgttcttaggcgatttgca
aaacgggtgtacgtggctttaccaacagaagacacacggctaaaactggtcaagaacctt
ttagggaagcacgggaatcctctcacacaaaaagaactgtcccagcttgccagaatgaca
gaaggctactctggcagtgacctgacctcgctggccaaagatgcgtccctcggtcccatc
cgagagttgcgtccagaacaagtcaggaacatggccgcaaacgaggtgaggaatatcagg
ttctctgatttcgtggagtcactgaagaagatcaaaaagagtgtcggaccacagacgctg
gacctgtatgtgcgctggaacaaggactatggggacaccacgggtgcatga
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