Oncorhynchus tshawytscha (Chinook salmon): 112266027
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Entry
112266027 CDS
T05605
Symbol
cica
Name
(RefSeq) protein capicua homolog
KO
K20225
capicua transcriptional repressor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112266027 (cica)
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112266027 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
112266027
NCBI-ProteinID:
XP_042150855
LinkDB
All DBs
Position
LG13:35641635..35683193
Genome browser
AA seq
2538 aa
AA seq
DB search
MKPIKKQGRRSPPSTRAKGGKRRGTGDSGEKRDSDENRDRSPKSQTSPQTSSHSESSQEE
SVTLTTMATPEREGHREGPRVPETVAAAAGSLPGKSEDSLPGSVKSLSAHSTDSSSSATS
AANSPNPSSNRKTATFKARVPKKKYTSEHCAAAAAAAANHGGPGNTGAPPLNRNSAHSDS
NAGSQLSSLSSGPGSAAREGGSLTDINSQTRRPVEDYITTIAPPQDRDNTPGPPPTGDRD
RRGPEGGREISPSPVRCSSTDTASEHDLDVSEPHRSNSHHANPTPEAHTLALVQRSTPQT
PTPQSLSDALADALAKGLKNQRVLARQARRRTGKGEEENGGGGRESMDSVFRAGVVRRVS
GEHGSLEVQLNGEKELYRYPFREGAQGPVDIIMDAPPPGSQAVPIGTPVCVPFGGNEDGG
TTEAQRQWYREGLVTQVDSHPAVSYPYRVLLEDRVPPGDEEGDGRVGTPTAVWVSRQSLR
LLVPPWDLDLGPCGGGREESDPAAKRGREREREKEDRDEIEVEQELCRLSRGMGLSATVA
GSVLGRLSYPGTAPASSSSSTVSSPVTPASVLKPREGQAAPPLHAPDPRGGHRGVPLQHG
AHGGGGGGGQHRPTGGVPTQAHTLQAAPGLPQPPPVCGPEPRRHPAGGPPPGPQPPPPPS
PTVLLGLESGALAAGAAVIATPQLPPLSSSSSRGSLDKPPSSNSNSHGASGGGGGSCSGS
TSSSRSRTPLTAAQQKYKKGDVVCTPTGIRKKFNGKQWRRLCSREGCSKESQRRGYCSRH
LSMRTKEMEASGGGRDRGGASSTGTLTPSDLRLGGGRTSSEFDWDNTSRDSSEASSRGGD
SRPRLVLPSLLPQDLSRFDFDECEAATMLVSLGSSRSGTPSFSPISNQSPFSPTPSPSPS
PLFVFRPATFSPITAPPSLTPRRHRHLSGTKVGTPGLERERHLSGIVPTFQTNLTFTVPM
SPSKRKLDALPPPLPLSAQDYSKPDQQLGENIGLSPAAFRVLSPQSQPTTPSSLSFPRPR
SATSRPPSSAASTPPPMLVSPTPPSPLPQDPSPRRVVPLRDSPVIVRNPDVPLAKFTDGP
LVRRGGGGRSSREHSQPLHLATGLQAPVPINGAATNGAVLLRNPASTLVLVTSSQSLTPA
VAGHPAHSSPTLSGGSASISSTGSALSSSGSGGREWERKPGGHQDAIGGALPQPVACHPS
PTALLPLILPAESPHPAPRKDIIIGRPGTVWTNVEPRSVPVFPWHSLVPFLEPSQSSAAA
QPTDGQQLVNQSKEPRCGVAVVSDGWVGPPDAEQGSPSRPPPSSNDNDPPAGRAERGGAD
SETESDADDPFFPGVANDPAPSTGPIKRRTQSLSALPKDGDRKREKDHIRRPMNAFMIFS
KRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCN
KDRRKSISEGRETPGAKEARERSMSESTEPESVSQGMEAKGAAGPDWPGGSERHAGAYSG
QLPRPRAFSQSAVHSLERRERARDVEKLCRDGAGSFRSRPPTLSLTQCGASEDVTSDEER
MVICEEEGDDDVMEDSCPEGSIDLKCKERVTDSDEDEPDGQRVFQPVVRSSLPYATSTSH
ADSHSDSTKGNTGGSTGESSERKRKRGMEGGEEGSGESKRGGGGGQVPSNSIPGSAPFNS
TPALGYGLTQVLSAVRMAPTMVTNVVCPIASTPIPITSKPMEGPIALSALPGEKKATLLI
GGPGAVGGPITAGGGYLSSSSPNPVSVGPGGLQVTSLVLGGAFPNQSIQLIAPPQHLLSP
THSTLPLPLPLLQPQFLPAASLTSAGGAKPGLTQVQYILPILSSVSANPKSPSPQLTQQP
TGVLTLPSTLPTHVFQANGIHSGAGAGIRYAAVGGVSPGARAQAQSPVLQSKMLVPMATV
RTGSTPPQPISHVAPPLPVQNGALPGNKIIHIAPMPMVQTNVHPAGAVHPGSPFPVSMAT
ATVMTPGIKPPQTVLLTSPPTRITYVQSSTGVVSTATVQAPLSPGPAYLPSSLTSLGFTA
IAPAGQALMQPLVAGQPPLLAPALSPGAPGTGRQLLTPIYPAPSITLASGVVAMTSVPPN
LAQEVSGQSSASAVGVQGSKDVTRSHEEGMPHLTAELEQKSQVEGQAQRKNKAQIKKENT
TEDVEAYSKPGANSMAMSSSNIPTGSEEDGSRASHMKEENTDDDRDYARGNGEREREIKK
ESGTPEPEESREAEDWPHEGHNKGDSGNGGHSKEAGLREPLHPPTGLDPPPPPPQTDRDA
PPSAKKTKFRPPPLKKPSDAIEKVLSGSYFEERFAELPEFRPEEVLPSPTLQSLATSPRA
ILGSYRKKRRNSTDLDSSAEDPSSPRRKAAARSRLSSCSSEPNTPKSEVKCEGDIFTFDR
AGAESEDVLGEMDKVPYSSLRRTLDQRRALVMQLFQEHGFFPSAQATAAFQARYSDTFPT
KLCLQLKIREVRQKIMQTATPGTPGISEPGGSTTGVMGSTDSASAAIGSSNTNTRDGTGT
GPGERGRSPEEPRNVGKL
NT seq
7617 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgattaaaaagcaaggaaggcgctcgcccccgtcgacccgagccaaagggggg
aagagacgggggacaggggacagtggagagaaaagagactcggacgagaacagagaccga
tcccccaaaagtcagacctcaccccaaacctcatctcactcagagtcttctcaggaggag
tcggtgacactcacaacgatggccacgccagagagggagggccacagagaggggccccgg
gtcccagagacagtggccgcagcagcagggtccctccctgggaagtcggaggactccctc
ccggggagcgtcaaatcgctgagcgcccacagcacagacagcagcagcagcgccaccagc
gctgccaacagccccaacccctcgtccaaccgcaagacggccaccttcaaggcccgcgtc
cccaagaagaagtacacctctgagcactgtgctgccgccgccgctgccgccgccaaccac
ggaggccccggcaacaccggcgcgcctccactgaacagaaatagtgctcacagtgacagt
aacgccggaagtcagttgtcgagcttatcttcggggcccgggtcggcggcgagggagggc
ggttcgctcactgacatcaacagtcagaccaggagaccagtggaggactatattaccact
atagctccaccacaggacagggacaacacacctggaccccctcccacaggggacagagac
aggagaggcccagagggaggcagagaaatctcccccagccctgtccgctgctcctctaca
gacacagccagcgaacacgacctggacgtgagcgagccacaccgctccaactctcaccac
gccaaccccacccccgaagcacacaccctggccctggtgcaacgtagcaccccgcaaact
ccgaccccacagagcctgtcggacgcgctagccgacgccctggccaaaggtctaaagaac
cagcgggtgctagccaggcaggctcggaggaggactggaaagggggaagaggagaacgga
ggaggggggagggagagcatggactcagtgttcagagcgggcgtggtgcggcgagtgagc
ggcgagcacggcagcctggaggtgcagctgaacggcgagaaggagctttaccgctacccg
ttccgtgagggcgcccagggacccgtggacattatcatggacgccccgccgcccggctcc
caagccgtccccatcggcacccctgtgtgcgtgcccttcggaggcaacgaggacggcggc
accacagaggcccagcgccagtggtaccgagagggcctggtcacccaggtggactcccac
ccggctgtgtcctacccctatagagtgttgctagaggatagagtgcccccaggggatgag
gaaggggatggcagggtgggcactccgaccgctgtgtgggtgtcccgtcagagcctccgc
ctgctggtgcccccctgggacctggacctgggaccctgcggaggggggcgagaggaaagc
gatcccgccgccaagagagggcgagagagggagagagagaaagaggacagggatgagata
gaggtggagcaggagctgtgtcgcctcagccgtgggatggggctcagcgcgactgtggct
gggtccgtgttggggaggctttcataccctggaacggcccccgcctcctcgtcttcctcc
actgtcagctcccccgtcacccccgcctcggtgctgaaaccgagagagggccaagcagca
ccaccacttcatgcccctgacccccgaggaggacatagaggtgtcccacttcagcatggt
gcccatgggggcggcggggggggcggtcaacacaggcccactggcggtgtcccaacacag
gcacatactctccaagccgcccccgggctacctcagcccccacctgtctgtggtccggag
cctcggaggcaccccgctggtgggcccccacctggccctcaacccccaccccctccctcc
cccacggtgctactggggcttgagtcgggagcgctggcagcgggggcggccgtcatcgcc
acccctcagctccctcctctgtcctcctcatcatcccgcggctccctggataagccgccc
tcttcaaactccaactcccacggcgcatctggagggggtggaggctcgtgctcgggttcg
acttcctcgtcgcgctcccgcaccccgctcaccgcggcccagcagaagtacaagaagggc
gacgtggtgtgtacccccacgggcatccgcaagaagttcaacggcaagcagtggaggagg
ctgtgctccagagagggctgctctaaggagtcccagagaagaggctactgctcgcgtcat
ctctccatgagaactaaagagatggaggccagcggagggggcagagaccgtggcggggcc
agcagtacgggcaccctaaccccgtcagacctgaggctgggcggcggccggaccagttca
gagttcgactgggacaacacgtcgcgagacagcagcgaagcgagcagtaggggaggggat
tcacgaccccgcctggtcctgccctcactcctgccccaggacttatcacgcttcgacttt
gatgagtgcgaggcggccacaatgctggtatctctgggcagctcccgctcgggcacgcct
tccttctctcccatctccaaccagtcgcccttctcgcccacaccgtcgccctcgccttcc
ccgcttttcgtcttccgcccggccaccttcagccccatcacggcgccgccttcgctcacc
cctcgccgccaccgccacctgagcggcactaaggtgggtacgccgggcttggagcgcgag
cgccacctgtcgggcatcgtacccaccttccagaccaacctcaccttcactgtgcccatg
agccccagcaagcggaaacttgatgcccttcctccgcccctgcccctctctgcccaggat
tactccaagcccgaccagcagttaggggagaatataggcctaagcccagccgccttcagg
gtgctctctcctcagagccagcccaccaccccctcctccctctccttcccccggccccgg
agcgccaccagccgccccccgtcctccgccgcctccacccccccgccaatgctggtgtct
cccacccctccctccccacttccccaggaccccagtccccgccgcgtcgtgcccctgcga
gactcccccgtcatcgtgcggaaccccgacgtccccctggccaagttcacagatggaccc
ctggtgaggaggggaggaggaggccgctcctccagagagcacagccagcccctgcacctt
gccaccggcctccaagcacccgtgcccatcaacggcgccgccaccaatggcgcagtcctc
ctgcgaaaccccgcctccacccttgtccttgtaacctcctcccagtccctgaccccagcc
gtcgccggacaccctgcccactccagccccaccctcagtggtggctccgcctccatctcc
tcgactggctccgccctgtccagctctggatcaggaggtagggagtgggagaggaagccc
ggcgggcaccaggacgccattggaggggcattgccccagccggtagcctgccacccctct
ccaaccgcactgctgcccctcatcctaccagccgagtcccctcaccctgcaccccgcaag
gacatcatcattggacgacccgggacagtatggaccaatgtggagcctcgttcagtgcca
gtgtttccttggcattcattggtccctttcctggagcccagccaatcgagtgcggctgcc
cagcccactgatggccaacagcttgtcaatcagagcaaagagccccgttgtggggtggcc
gtagtgagtgacggatgggtgggtccaccagacgcagagcaagggtctccatcccgccca
ccaccctcctccaatgacaacgaccccccagctggaagagcagaaagaggtggagccgac
agcgagacggagagcgatgcagacgacccgttttttccgggtgtagccaatgatcctgcc
ccgtctacgggccctatcaagaggcgcactcagtccctcagcgcccttcccaaagatgga
gacagaaagagggaaaaggaccacattcggcggccaatgaacgcgttcatgattttcagc
aagcgtcaccgggcactggttcatcagaggcaccccaaccaggacaaccgcacggtcagc
aagatcctgggcgagtggtggtacgccctggggcccaaagagaagcagaagtaccacgac
ctcgccttccaggtgaaagaggctcacttcaaggcccacccagactggaagtggtgcaac
aaggacaggaggaagtccatctctgagggccgagagaccccaggggccaaagaggcacgc
gagaggagcatgtcggagagcacagagcctgagtcagtctctcagggaatggaggcgaag
ggtgcggcaggcccggactggcctgggggctctgagcgtcatgcgggggcctacagtggt
cagctccctcgcccccgggccttctcccagagtgcagtacacagcctggagaggagggag
cgggccagagatgtggagaagttgtgtcgagatggggcaggctcattccgcagccgcccc
cctactctctccctgacacagtgtggggccagtgaggacgtgaccagcgacgaggagcgc
atggtcatctgtgaggaagagggggacgatgatgtcatggaggactcgtgccctgaggga
tccatagacctcaagtgtaaagagagagtgactgacagtgatgaggatgagccggatgga
cagcgagtcttccagccagtggtccgctcctctctcccctatgccaccagcacctcccac
gccgactctcactccgactctaccaaggggaacacaggggggagcactggagagagctct
gagaggaagagaaaacgagggatggagggaggagaagagggaagtggagaatcgaaaaga
ggaggtggaggggggcaggttccctctaattccatccctggatcggcgcccttcaactcg
acccccgctctgggttatggactcacccaggtgctcagtgcagtccggatggcccccacc
atggtgaccaatgtggtatgccccatcgccagcacgcccatccctatcaccagcaagcca
atggaaggccccatcgccctcagtgccctccctggggagaagaaagccacacttctgatt
ggtggaccgggagcagtaggtgggcctatcacagcagggggtgggtacttgtcctcgtcc
tctcccaatcccgtgagtgtggggccgggggggctgcaggtcaccagtctagtgctggga
ggagctttccccaaccagtctatacagctcatagccccgcctcagcatctcttaagcccc
acccacagcaccctgccacttcccctccccctgctgcagccccagttccttcctgccgcc
tctctcacctccgctggcggtgccaagcctggcctcacccaggtgcagtacatcctgccc
atcctgtcttctgtcagtgccaaccccaagagcccctccccccagctaacccagcagcca
accggcgtcctcacgctgccctccactctgcccacccatgtcttccaggccaatggaata
cattcgggggcaggagcgggaataagatatgccgcagtgggaggggtcagtcctggagca
agagcccaagcccagtctccagtcttgcagagcaagatgttggttcccatggcaacagtg
agaacaggctctactcctcctcagcccatctcccacgtggcccctccccttcctgtgcaa
aatggtgctctaccaggaaacaagatcatacacatcgcccccatgccaatggtccagaca
aatgtccaccctgctggagcagtgcatcctgggagtcccttccctgtatccatggcaaca
gccactgtgatgactccgggcatcaaaccccctcagactgtgttgctgacctcgcctcca
acaaggatcacttatgtccaatccagcactggagtggtctccacggcaacggtccaggcc
cctctctctccaggacccgcctacctgccgtcgtccctgacgtctctgggcttcaccgcc
attgctccggccggccaggccctgatgcagcctctcgtagcgggccaaccgcccttgcta
gccccagccctttcccctggagccccggggacaggacgtcaactcctcacccccatctac
ccggccccaagcatcaccctagcgtcaggtgtggtcgccatgacctccgtgccccccaat
ttggctcaagaagtgtctggccaatcatcagcctcggctgtcggtgtgcagggttcaaag
gacgttacccggtcacatgaagagggaatgccacacctgactgcagagttggagcaaaag
tcacaggtggagggccaggcccaacggaagaacaaggctcagataaagaaagagaatacg
acggaggatgtcgaggcatatagcaaacctggtgctaactcaatggctatgtccagcagc
aatataccaacagggagtgaagaagacggtagtcgagccagccacatgaaagaagagaat
acggacgatgaccgagattatgccagagggaatggagagagggagagggagataaagaag
gagagtgggacgcctgaaccagaggagtccagggaggcagaggattggccccacgagggc
cacaacaaaggggacagtggcaacgggggccacagcaaagaggctggactgagggaacct
ctccaccctcccacaggactggaccctcctccgcctcccccacagactgacagggacgcg
cccccctcagccaagaagaccaaattccgccccccgccgctcaaaaagccctcagacgcc
attgaaaaggtcctgtcggggtcctatttcgaggagcgctttgccgagctgccagagttc
aggccagaagaagtgctgccctctcccaccctccagagtctggccacctccccccgagcc
atactgggcagctaccgaaagaagaggaggaactccacagacctggactcgtctgcagag
gaccccagctctcccaggaggaaggctgccgctcggagccgtctctccagctgcagctcg
gagcccaacacaccaaagagcgaggtcaagtgtgagggggacatcttcaccttcgacaga
gctggtgctgagtctgaggatgtcctgggggagatggacaaagtgccgtactcctctctc
cggaggactctggaccagcgcagggctctcgttatgcagctcttccaggaacacggcttc
ttcccttcagctcaggccactgcagccttccaggcacgatactcagacaccttccccacc
aaactgtgtctgcagctgaagatcagggaggtgaggcagaagatcatgcagacagccaca
cctggaacccccggaatctctgagcccggcgggtcaacaacaggggtcatgggttcaacg
gactccgcctcggccgccatcggctcctccaataccaacactcgagatggtacagggacg
gggccaggagaaagagggcggagtcccgaggagcccaggaacgtgggcaaattgtag
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integrated database retrieval system
