Oncorhynchus tshawytscha (Chinook salmon): 112266053
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Entry
112266053 CDS
T05605
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04270
Vascular smooth muscle contraction
otw04625
C-type lectin receptor signaling pathway
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
112266053
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
112266053
09153 Circulatory system
04270 Vascular smooth muscle contraction
112266053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112266053
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112266053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
PH
Motif
Other DBs
NCBI-GeneID:
112266053
NCBI-ProteinID:
XP_042151765
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All DBs
Position
LG13:48836261..48901421
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AA seq
1467 aa
AA seq
DB search
MSDTQSSITDRFSNKANRSSSILSKDHPPDKKPNSDKPAVSSSHEFDPTDVLVQKSDCVL
VEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSECEAKLGFPGPQAGSSPVSSP
NATGQPTGERPYSPHDRITSPLPIWEENNSVHSQKVDILQKMLSKEQQDLQAMKEEYSRN
PTPKLLKDIQEAKKHIPQLQWQLSKATGGAQDALQLGDGDDGSMVDMDHTPSSRGDSSND
LSWSSSTMSPVLRNFAPASPESLCQRDMLSYHSPKSTPRDSFNSCHSPDPEDTPDLDSLS
PSAVNSPSSRFVSQIIGAEDDYFDSDQEQVNGQCSCFQSMELLKSRPAHLAAFLHHVVSQ
FDPAPLLCYLFADLCKQTNSKETRRVFMDFHSFFIDRGANLKVAVPESISSDLDRRRTEL
IPEEQNRQLVQMMQDTLLPDIQRNLEDFRQKRSMGLTLAEGELARLDTERVRDRVALERE
RSCAENIITKIEDVLLTTQSTEEEKCTTMQYVILAYMKRLGVKVKEPRGLEFKRVRLNFL
PKIKKSVKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPTSIGKAMDLNKPRPQKQLSQPC
LGAVEHLEAGRLTASQSSEGSELTHSSNTNATSPTNNTTNSYASDGGSRDSEFVLTPNSA
FLKLSEGLGDLDSLQYTPNTHFDYSLSPYSLDQLQEEDRESRILEGTPKSIRRLDGLGPT
EVQSEDDQGGTDSEHDPLNWQQLVGREILAGLGAHEIKRQEVINELFYTERAHLRMLKVL
DNIFYQKLTREAILPPADIKNIFTNLGDIVQLHVLISEQMATIRKRNETSVIDQIGDDLL
SWFSGGEEEKIKQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDI
IPVEMQRLTKYPLLLENIAKYTDDIMEKDKVKKAGDCCRKILNHVNQAVKESENKQRLED
YQRRLDLSSLKQTENPMITELKNLDLTKKKMIHEGPLSWKVNKDKTIELYTLLLEDILVL
LQKQDERLVLKCHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQI
YELMAQTVSEQRMWQRQITQRADAMKVKPHSGIHLPQTDVEIIAADVARLGKDPDRISSG
SSQSIDKECSAASGGVMQTSLPNAKSFVGLKPEEEEPSREEGLYGDPDLADRLPFRMAVD
GFSESDGLGFSPSRADDALKTLSALKQVLVTQLMSQEDGRAGRSSSGGGRLLRTTSLRTP
VDSRARVAVQKGSGMCTQASHPEDPAQDLVSGDTGFFESPEDYAGYLVLEGYGGSGESST
DDDLQATGKQLSASRVCGAGDSGISLRFSSASQAGSISSFSRQVLSHLRNLQTNLNHLKE
VEAKYHSLLRQRPARSSTDTDINKDKR
NT seq
4404 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagtccagtatcactgataggttttccaataaagcaaacagaagcagt
agcattctcagtaaagaccacccccctgacaagaaacccaacagtgataaaccggcagtc
tcctcttcacatgagtttgaccctacagacgttctggtgcagaagagtgactgtgttcta
gtggaggggaagcccgagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgacggtgagcggagacaacccagtgtttgtgcagctcgtcaag
gaagatggcgctgcagagcgtgcgggtgtacagacaggtgaccggatcatcaaggtgaac
gggaccctagtaacacattcaaaccacgtggaagtagtaaagctcatcaaatcgggctcc
tatgtggccctcacagtgttggggcgaccccctgggttgccccagatccccctatcggag
tgcgaggctaagctggggttcccggggccccaggctgggtcgtcccctgtctcctctcca
aacgctactggacagccaacgggggagcgcccatacagcccccatgaccgcatcacctct
cctctaccgatatgggaagagaacaacagcgtacacagccaaaaggtggacatcctgcag
aagatgttgtccaaggagcaacaagatttgcaggcaatgaaggaggagtacagcaggaat
ccgacgccaaaactactgaaggacatccaggaagccaagaagcacattccacagctgcag
tggcagctcagtaaggccactggaggagcacaggatgccctgcaattgggtgacggagat
gacggtagcatggtggacatggaccacaccccttcctccaggggagacagtagcaatgac
ctctcgtggagcagcagtaccatgtcccctgttctccgcaattttgcacctgcctccccg
gagagcctgtgccaaagagacatgttgtcctaccacagcccaaagagcacgccccgagac
agcttcaactcctgccactcccccgacccagaagacactccagacctggactcgctgtcc
ccctctgctgtaaacagcccttcctcacgcttcgtctcccagatcattggagctgaggac
gactactttgactctgatcaagaacaggtcaatggccagtgcagctgtttccagagcatg
gagctgctcaagtccagacctgctcacctggcagctttcctgcatcacgttgtctcgcag
tttgaccctgcaccgctgctctgctacctcttcgctgacctgtgcaagcaaactaactcc
aaagaaaccagacgggtgttcatggacttccacagcttcttcatcgaccggggagctaat
ttaaaagtagctgttcccgagtccatctcctctgaccttgaccggcggaggacggagctg
atccctgaggagcagaacagacagttagtccagatgatgcaggacaccctgctccctgac
atccagaggaacctggaggacttcaggcagaagcgcagtatgggcctaaccctggctgag
ggggaactggcccggctggacacggagcgcgtcagagaccgggtagcactggagagagaa
cgctcctgtgctgaaaacatcatcaccaagatcgaggatgtcctgttgacaacccaatcc
acagaggaggagaaatgcactactatgcagtatgtcatcctcgcgtacatgaagcgcctt
ggagtgaaagtcaaagagccacggggcctagagttcaaaagggtccgcctgaacttcctc
cccaagatcaagaagagcgtcaagaccgagaaggagggaggggaggagaaggtgaaacga
accaggtttcccagcatcctcgggcctccgcgccggcccagccgagtcgaccccacgtcc
atcggcaaggccatggacctcaacaagccgcggccccagaagcagctgtcccagccctgc
ctgggggccgtggagcacctggaggcgggtcgcctgacggccagtcaatccagcgagggc
tcagagctcacacattcctccaataccaacgccacctcgccaaccaacaacaccaccaac
agctacgcctcagacggaggcagcagagactctgagtttgttctgacccctaactctgcc
ttcctcaaactgagcgaaggtcttggagacctggacagtctacagtacactccaaacaca
cactttgactacagcctgagcccatacagcctggaccagctgcaggaggaggacagggag
agcagaatccttgaaggaacacccaagtctatcagaaggttggatggccttggtcctacg
gaggtgcagagtgaagacgaccaaggaggcacggactctgagcacgaccctctcaactgg
cagcagctggtgggacgtgagatcctggctggactcggggcccacgagatcaagagacag
gaagtcattaacgagctgttctacactgagagggcccacctgcggatgctcaaagtgctg
gacaacatcttctaccagaagctcaccagagaggccatactgcctcctgccgacatcaag
aacatcttcaccaacctgggggacattgttcaactgcatgttttgatatctgagcaaatg
gcaacaatccggaaaaggaacgagacgtctgtaatcgaccaaataggagacgacttgctg
tcctggttcagcgggggcgaggaggagaagatcaagcaggcggtgggcacgttctgcagc
aaccagccctttgctctggagctcatcaagagcaggcagaagaaggactcgcgcttcacc
tccttcatgcaggaggctgagagtaaccgactgtgtcgaagactccaactgaaggacatc
attcccgtggagatgcagaggctcaccaagtaccctctcctactggaaaacattgccaag
tacacagatgacatcatggagaaagacaaggtaaagaaggcaggcgactgctgcaggaag
attctcaaccacgtcaaccaagcggtgaaggagtctgaaaacaaacaaaggctggaggac
taccagaggcggctagacctctcgtctctgaagcagacggagaaccccatgattacagag
ctcaagaacctggacttgaccaagaagaagatgatccacgagggaccactgtcatggaag
gtcaacaaggacaagactattgagctgtacaccctgctcttggaggacatcctggtgctg
ctgcagaagcaggacgagcggctcgtcctcaagtgccacagcaaaaacctgtcgggcacc
gccgacaccaagcacatcttcagccccatcatcaagctcaacgcggtgcttgtgcgctct
gtggccacagacaacaagtcgttctttgttctctcaatgtcggacaacggggcacagatc
tacgagctgatggcccagaccgtatcagagcagagaatgtggcagcggcagatcacccag
agagcggacgccatgaaagtgaagccgcacagcggcatccacttacctcaaacggatgtg
gagatcatcgctgcagacgtagcccgactcggtaaggacccggaccgcatctcctctgga
agcagccagtctatagataaagagtgcagcgctgcctctggtggcgtgatgcagacctct
ctcccaaatgccaagtcctttgtaggactcaaacccgaagaggaggagcccagtcgggag
gaggggctttacggggacccggaccttgcagataggctgcccttccgcatggccgtagac
gggttcagcgaatcggacgggctgggcttcagtccttctagggctgacgatgccttaaag
acattgtcggcgctgaagcaggtcctggtgacccagctcatgtcgcaggaggacggacgt
gctgggcgctcctcctcggggggtgggcgtcttctcaggaccacgtccctgaggaccccc
gtggacagccgtgcccgggtggctgtgcagaaaggctccgggatgtgcacccaggccagc
caccctgaggacccggctcaggacctggtgtctggggacactggtttctttgagtccccc
gaggattatgcagggtacctggtcctggagggctacgggggctcgggggagagcagcacg
gacgatgacctccaggccaccgggaagcagctgagcgcctcgcgggtctgcggggcagga
gactctgggatcagcctgaggttctcctctgcctcacaggcaggtagcatctccagcttc
agccgacaggtcctgtcccacctccgcaacctgcagaccaacctcaaccacctcaaggag
gtagaggccaagtatcacagtctactacgccagaggccggccaggtcatcgacagacacg
gacatcaacaaagataaaagatag
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