Oncorhynchus tshawytscha (Chinook salmon): 112266105
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Entry
112266105 CDS
T05605
Name
(RefSeq) neurobeachin
KO
K24183
neurobeachin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112266105
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Rab4 associated proteins
112266105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WDR55
Laminin_G_3
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
PIGA
Motif
Other DBs
NCBI-GeneID:
112266105
NCBI-ProteinID:
XP_042152026
LinkDB
All DBs
Position
LG13:complement(61053092..61308596)
Genome browser
AA seq
2596 aa
AA seq
DB search
MISIVHIYNRWRNSEIRCYVNGQLVSYGDMAWHVNTSDSYDKCFLGSSETADANRVFCGQ
LGAIYVFSEALNPAQIFAIHQLGAGYKSTFKFKSESDIHLAEHHKQVLYDGKLASSISFT
YNAKATDAQLCLESSPKENASIFVHSPHALMLQDVKAIVTHSIHSGIHSIGGIQVLFPLF
SQLDYHQPNYQHHETQLETTVCATLLVFLVDLLKSSVAMQEQMLGGKGFLVIGFLLEKSS
RVHITRAVLEQFLSFAKYLDGLTHGAPLLKQLCDHILFNAAIWIHTPAKVQLSLYTYLSA
EFIGTATIYNTIRRIGTVLQLMHSLKYYYWTCNPEASSGITPKGLDGPRPTQQEIISLRA
FMLLFLKQLILKDRGVKEDELQSILNYLLTMHEDDNIHDVLQLVVALMSEHPASMIPAFD
QRNGIRVMYKLLASKTESIRVQSLKVLGYFLKHLGHKRKVEIMHTHSLFTLLGERLMLHT
NTVSVTIYNALYEILTEQVCTQVVHKPHPEPDSTIKIQNPMILKVVATLLKSSSPSVELM
EVRRLFLSDMIKLFSNSRENRRCLLQCSVWQDWMFSLGYINPKNPEEQKMMEMVYSLFRI
LLYHAIKYEWGGWRVWVDTLSIAHSKVTYEAHKEYLAKMYEDYQRQEEENIKKGRKGLVS
TISGLQDLQAGGIQGNMEIREIDSQTQTPESEADYPETPGHPRNTPSEGKTREEGGLGGT
GRTGSGVRVEVHDLLVDIKAEKVEATEVKLDDLDLSPEPLGVTVGVAGGVVSEDRGGALV
QVDSLLDNVYCAAVEKLSSSAASGVLVPNATVAVAPDNHNTGPLITLADDDKDSLPSNSS
FMFGQEEPLVLPSPASNPDPDPDSPFPPGHSHDLGLLDHMTGSSELGTIGMVGTVTPGGP
ISSILEEERFKLQTTLSDVTSMPREEACSKGSEFTETGAGARVEGSGLSEGGEPLAGGKG
SGTDAVSNTSDTERSDEGKEVKKIQTTATTQSLHSRTAAQLERDLRVDLGFRGMPMTEEQ
RRQFSPGPRTTMFRIPEFKWSPMHQRLLTDLLLALETDVHIWRSHSTKSVMDFVNSNENI
IFVHNTIHLLSQMVDNIIIACGGILPLLSAATSPSAELENIEATQGMSSETAVSFLSRLM
AMVDVLVFASSLNFSEIEAEKNMSSGGLMRQCLRLVCCVAVRNCLDVRQRQRDRGTNSKS
QDNLYGAASANKDPDRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYR
DILEPQRETNRMISQSAYSIRHEINSSTSTKTPLAYPDQSKESPTPVEELHIERGCLPHT
DSGIGEEQMASVLNGADLDTLGPGRADAMSSLLGSLSSGEKHSQESLLEPPGLEVLRTTS
SISSISHSNINVRRILKSLVAGPVEGVEPGPEPLPYPDLAVQRETHSPMLPMQFHSFDRS
VVVPVKKPPPGSLAVNTVGHASSSSLATGSTPNIFVAASNTPKSMINTTGATDSASSSST
SSSSFVNGATSKNLPAVQPVAPMPEDTVENMSITTKLERALEKVAPLLREIFVDFAPFLS
RTLLGSHGQELLIEGLVCMKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLC
HAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESNCAQYTADRREEEKMCDHLISAAKHR
DHVTANQLKQKILNILTNKHGAWGSLAQSQLNDFWRLDYWEDDLRRRRRFVRNPFGSTHL
DIPCKMLNDYGSTEDELVKSKKGFHSQTVANQSPETDLMLDGDDDTASLLQEKEMDNLAG
PVVLSTPAQLVAPVIVARGTLSITTTEIYFEVDEDDPSFKLLDSTVLAYSEGLHGKWMFS
EIRAVFSRRYLLQNTGLEVFMANRTSVMFNFPDQATVKKVVYSLPRVGVGTSYGLPQARR
ISMATPRQLFKSSNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYAVFPWVLTNYESE
ELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEEDQTPPYHYNTHYSTANSTLLWLL
RIEPFTTFFLKANNNKFDHPDRTFSAITRSWRHCQRDTSDVRELIPEFYYLPEMFGNSNG
YHLGQREDGKMVCDVELPPWANKPEDFVRINRMALESEFVSCQLHQWVDLIFGYKQRGPE
AVRALNVFHQLTYEGSVSLDSITDPALREAMEKQILIVGQTPSQLLIEPHPPRSSAMHLC
FLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLSVPAAVTVTCSRLFAVNRWH
NTVGLRGAPGYSLEQAHHLPIEMDPLIANNSGSNKRQITDLVDQSIQINTHCFVVTADNR
YILVCGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLL
WYWSGRHHIIGDNPNNSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTIT
GDLLRALEGPDNCLCPRLISVSSEGHCIICYERGRFCNFSINGKLLAQMEVNDSTRAIML
SSDGQNLVTGGDNGVVEVWQACDFKQLYIYPGCDAGVRAMDLSHDQRTLITGMASGSIVA
FNIDFNRWHYEHQNRY
NT seq
7791 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcatcgtccatatctacaaccgctggaggaacagtgagatccgttgctacgtc
aatggtcagctggtctcctatggcgacatggcctggcacgtcaacaccagcgacagttat
gataagtgcttcctgggttcgtcggagacagctgatgctaacagggtattctgtggtcag
ctgggggccatctatgtgttctctgaggctctcaacccagctcagatatttgccattcat
cagctgggagcgggctataagagtacgtttaagtttaagtcggagagtgacatccacctg
gcagagcaccataagcaggtcctgtatgatgggaagctggccagctccatctccttcacc
tacaacgccaaggctactgacgcccagctctgcctggagtcatcgcccaaggagaacgcc
tccatcttcgtccactcaccccacgcccttatgctacaggatgtgaaggccatagtgacc
cactccatccacagtggcatccactcaataggagggatccaggtgctgttccctctcttc
tcccagctggactaccatcaacccaactaccagcaccatgagacccagctggagactacc
gtctgtgccaccctcctggtgttcctggttgacctgttgaagagctcagtggcgatgcag
gaacagatgctgggagggaaaggattccttgtaatcgggtttctgctggagaagtcctcc
agggtccacatcactcgtgcggtcttggagcagttcctgtccttcgctaagtacctggat
gggttaacccatggagcgccactcctcaaacagctctgtgaccacatcctgttcaacgca
gccatctggatacacacccccgccaaggtccagctctctctgtacacatacctgtctgca
gagtttatcggcacagcaaccatctacaacaccatccgtcgtattgggactgtgctgcag
ctgatgcacagtctgaagtactactactggacctgtaaccctgaggccagcagtggcatt
acacctaaaggactggatggtccaaggcccacccagcaggagatcatctctctcagggct
ttcatgttgctgttcctcaaacaactcatcctcaaggaccgaggtgtgaaggaagatgag
ctgcagagcatcctgaactacctgctaaccatgcatgaggatgataatatccatgatgtt
cttcagctggtagtggctctgatgtcagaacacccagcctccatgattccagcttttgac
cagaggaacggcataagggtgatgtacaagctgctggcctcgaagactgagagcatcaga
gtccagtccctcaaagtcctaggatactttctcaaacacctgggacacaaaaggaaggtt
gagatcatgcacacacacagtctcttcactctcttgggggagaggctgatgcttcacact
aatactgtgtcagtgaccatctacaacgcgctgtacgagatcctgacagagcaggtgtgt
acccaggtcgtccacaaaccccaccctgaaccagactctacaatcaagatacagaacccc
atgatccttaaggtagtagcgaccctgttgaagagctcgtcccccagcgttgagctgatg
gaggttcgacgtctcttcctctcagacatgatcaaactgttcagcaacagccgcgaaaac
cgacggtgtctgctgcagtgctcagtatggcaggactggatgttcagtctgggctatatc
aaccctaaaaacccagaggaacagaagatgatggagatggtctatagcctcttcaggatc
ctgctctaccacgccatcaagtatgagtggggaggttggagggtctgggtggatacactc
tccatcgctcactccaaggtaacatacgaggcccataaggagtacctggctaagatgtat
gaggactaccagcgtcaggaagaggagaacattaagaaggggaggaagggtctggtcagc
accatctcaggcctgcaggacctccaggccgggggcatccaggggaacatggagatcaga
gagatagactcccagacacagaccccggagagcgaggccgactaccccgagacccccggc
cacccccggaacacaccgtcagaggggaagacaagggaggagggggggctcggggggaca
gggaggacggggtcaggggtcagagtggaggttcatgacctgttggtggacatcaaggct
gaaaaggtggaagccacagaggtgaagctggatgacctggacctgtctccagagccgctg
ggcgtgacagtgggtgtggctgggggtgttgtctctgaggacaggggtggggcgttggtc
caggtggactccctattggacaacgtttactgtgctgctgtagagaagctaagcagcagc
gccgccagtggtgtactggtccccaacgcaactgtcgccgtcgcgcccgacaaccacaac
actggtcccctcatcacccttgctgatgacgacaaggacagtctccctagcaacagcagc
tttatgtttggccaggaagagcccctggtcctgccaagtcctgcttctaaccctgatcca
gaccctgactcccctttccccccgggccacagccatgacctgggcctgctggaccacatg
actggcagctctgagctggggaccatcggcatggtcggcacggtcactcctggtggtccg
atcagcagcatcctggaggaggagagatttaagctccagaccaccctgagtgacgtcacc
tccatgcccagggaagaggcctgctctaaggggtcagagttcacagagaccggggctgga
gctagggttgaagggtctgggttgtcggaggggggcgagcccttggctggtgggaaaggt
agtgggacagatgcagtcagcaacacctcagacactgagcggtcagacgaaggaaaggag
gttaagaagattcagaccactgctactacacagtccctccatagtcgtacagcagcccag
ttagagcgtgacctgcgtgtggacctgggcttcagagggatgcccatgacagaggagcaa
cgacgccagttcagccctggccctcgcaccaccatgttccgcatcccagagttcaaatgg
tcgcccatgcaccagcgcctcctcaccgacctgctgttggctctggagacagacgtccac
atctggaggagccattcaaccaaatccgtcatggattttgtcaacagcaatgagaacatc
atctttgtccacaacaccatccacctcctctctcagatggtagacaacatcatcatcgcc
tgtggagggatccttcctctgctctctgctgccacctctccttctgctgagttggagaac
atcgaggcgacccagggcatgtcttcagagacggctgtttccttcctgtcccgtctgatg
gccatggtggacgttctggtgttcgccagctcactcaacttctctgagatagaggctgag
aagaacatgtcctctggaggcctgatgagacagtgtctacgactggtgtgttgtgtagca
gtgaggaactgtctggatgttagacagagacagagggacagagggactaacagtaaaagc
caggacaacctgtatggtgcagcatctgccaacaaggaccctgacagacttctacaggac
gtcgatatcaatcgtctgagagctgtcgtgttccgggatgtggatgacagcaagcaggcc
cagttcttggcactagcggtggtctactttatctctgtcctcatggtgtcaaagtacagg
gacatcctggaaccacagagagagaccaacaggatgatcagccaatcagcatacagcatt
cgccacgagatcaactcatctaccagcacaaagacccccctggcgtaccctgaccaaagt
aaggagtcccccacccctgtagaggagctccacatagagagaggctgtctgccacacact
gactctggcattggagaggaacagatggccagtgtgttaaacggggcagacttggacact
ttaggacccgggcgagctgacgccatgtcctccctgctcggcagcctctcctctggggag
aagcatagccaagagtccctcttggagccgcctggcctggaggtcctaaggaccacctcc
tccatctcctccatcagccactcaaacatcaacgtacgaagaatcctgaagagcctagtg
gctgggcctgtagagggggtggaacctggaccagagcccctcccctaccctgatcttgcc
gtacagagagagacccattcccccatgctgcccatgcagttccactcctttgacaggagt
gtggtggtcccagtgaagaagcctccaccaggcagtctggctgtgaacacggttggacac
gcatcctccagcagcctggcaacaggctccacccccaacatctttgttgcagcctccaac
acccccaagagcatgatcaacaccaccggagctacagactcggcctcctcttcctccacc
tcctcctcatccttcgtcaacggggccaccagtaagaacctgcccgctgtccagccggtg
gcgcccatgcctgaagacacagtggaaaacatgagtatcactactaagttggagcgtgcg
ctggagaaggtggcccccctgctcagggagatctttgtggactttgcaccgttcctctct
aggaccctgttgggaagccatggtcaggagctgctcatagaaggtttggtgtgtatgaag
tccagcacctccgtagtagaactagtcatgctgctctgctctcaggagtggcagaactcg
atccagaaaaatgccggcctcgccttcatcgagctcatcaacgagggaagattgctgtgt
catgctatgaaggaccacatcgtgcgtgttgccaacgaggcagagttcatcctcaacaga
cagagagcagaagacgtccataaacacgctgagtttgagtctaactgtgcccagtacact
gctgatcggagggaggaggagaagatgtgtgatcacctgatcagcgctgccaagcacaga
gaccatgtgactgccaaccagcttaaacagaagatactcaacatcctcaccaataagcat
ggagcctggggcagcctggcacagagtcagctgaatgacttctggcgtctggattactgg
gaggacgacttacggaggaggcggagattcgtacggaacccctttggctccacccacctg
gacatcccctgcaagatgctgaacgactatggcagcacggaggatgagttggtcaagtcg
aagaagggtttccacagccagacagtagccaatcagagtccagagacggacctgatgttg
gatggagacgatgacactgccagtcttctgcaggagaaagagatggacaacctggctggc
ccagtggtcctcagcaccccggcccagctcgtggccccggtaatagtggcacgagggacg
ctctccatcacgacgaccgagatatatttcgaagtggacgaggatgacccctccttcaaa
ctgcttgactccacggtcctggcatactcagagggtctgcatggtaaatggatgttcagt
gagatcagagcggtcttctccaggcgatacctgctccagaacactggcctggaggtcttc
atggccaacaggacatcagtgatgtttaacttcccagaccaggcaacagtgaagaaggtg
gtctacagtctacccagggtcggagtaggaaccagctatggcctaccacaagccaggcgt
atctccatggcgacgccccggcagctcttcaagtcatccaacatgacccagcgctggcag
aggagggagatctccaacttcgagtacctcatgttcctcaacaccatcgcagggaggacc
tacaatgatctgaaccagtacgccgtgtttccctgggttctcaccaactacgagtccgaa
gagctggacctcaccctgccgggcaacttcagagatctctccaagccaattggagcattg
aacccgaagcgtgcagtgttctatgcagagcgctacgagacatgggaagaggaccagacc
cccccatatcactacaacacccactactccactgctaactccaccctgctctggctcctc
aggatagagcctttcaccacgttcttcctgaaagctaacaacaacaagtttgaccatcca
gaccggaccttctcagccatcacccgctcctggaggcactgccagagagacacctcagat
gtcagggagttgattccagagttctactacctgccggagatgtttggtaatagtaatggt
taccacctgggccagagggaggacggcaagatggtgtgtgatgtagagctgcctccctgg
gccaacaagcctgaggactttgtcaggatcaaccggatggccctggaaagtgagtttgtg
tcgtgtcagctgcatcagtgggttgaccttattttcggctacaagcagcgcgggcctgag
gcggtgcgcgccctcaatgtctttcaccagctgacctacgagggttccgtcagcctggac
agcatcactgaccccgccctcagagaggcgatggagaagcagattctgattgttggacag
actccgtctcagttgctcatcgagccacatcctcctcgcagctcggccatgcacctgtgt
ttccttccccagagtcctctgatgttcaaggaccagatgcagcaggatgtgatcatggtg
ttgaagttcccctccaactccccggtgacacatgtagcagccaacaccctgccacacctc
tctgtccctgccgctgtcaccgtcacctgcagccgactgttcgctgtcaaccgctggcac
aacactgtcggtttgagaggagcgccaggttactccctggaacaggcccaccacctgccc
atagagatggaccctctgattgccaacaactctgggagtaacaagcgtcagatcacagac
ctggtggatcagagcatccagatcaacacacactgcttcgtggttaccgccgacaaccgc
tacatcctggtctgtggcttctgggacaagagtttcagagtctactccaccgagacaggt
aagctgacccagatagtgtttggccactgggacgtggtgacgtgtctggccaggtcagag
agctacatcgggggagactgctacatcgtgtcagggtccagagacgctactctgctactg
tggtactggagcggacgacaccacatcataggagacaaccccaacaacagtgactacccg
gcaccacgagctgtgctgaccggccatgaccatgaggtggtgtgtgtctctgtgtgtgcc
gagctgggactggtcatcagtggagccaaagagggtccgtgtctggtccacactataaca
ggggacctgctgcgggccctggagggcccagataactgcctgtgtccccgcctcatatca
gtgtccagcgagggccactgtattatctgctacgagagaggacgtttctgtaacttcagc
atcaatggaaaactactggctcagatggaggtcaacgactcaacacgggccattatgctg
agtagtgacggtcagaacctggtgacaggaggagacaacggggtggtggaggtgtggcag
gcctgtgacttcaaacaactctacatctacccaggctgtgatgctggtgtccgcgcaatg
gacctctctcacgaccagaggactctcatcactggcatggcatccggcagcattgtggcg
ttcaacatcgacttcaaccggtggcactacgagcaccagaacagatactga
DBGET
integrated database retrieval system
