Oncorhynchus tshawytscha (Chinook salmon): 112266132
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Entry
112266132 CDS
T05605
Name
(RefSeq) hepatocyte nuclear factor 1-beta-A isoform X1
KO
K08034
transcription factor 2, hepatocyte nuclear factor 1-beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112266132
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
112266132
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
Homeodomain
Homeobox_KN
RHH_ERCC6L2
Motif
Other DBs
NCBI-GeneID:
112266132
NCBI-ProteinID:
XP_042152134
UniProt:
A0AAZ3R5R0
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Position
LG13:complement(65580139..65609540)
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AA seq
580 aa
AA seq
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MFSKMVSKLTSLQQELLSALLDSGVTKDVLIQALDDMDPSPNGFGVKLENLQMSPPSSKI
NGNDSKPVFLTLTNGHSKGKLSGDEGSEDGDDFDTPPILKELQSLNTEEAAEQREEVDRI
LAEDPWRAARMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYV
RKQREVLRQFNQAVQGSDSNMTEKGSQDQVLFFFPEFNPPGQGMGQQGEEVGSEPSCKKM
RRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLV
TEVRVYNWFANRRKEEAFRQKLAMDAYPIPTHSMNPLLSHSHNSPHHHSSQISASPPSKM
QVRYSQQGPGEVSSSTTISHHGSMATSQSVLQQVSPGGLDPSHSLLSPDAKMMSASGGGL
PPVSTLTNIHSSHHTHQQTQNLIMPLSGVMTIAQSLNTSQSVPVINSVAGSLAALQPVQF
SQQLHSPHQHGLMQQSPSHMNQQPFMATVTHSHSQYLPLMYPHKQEPPQYSHQSRFPSTM
VVTDANSLSTLSSMSSSKQDSTVNKMVQLGGLSWCPLQAW
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgaaaatggtgtccaagttgacatctctccaacaggagctcttgagcgccttg
ttagattccggagttaccaaagatgttctgatccaagcgttggacgatatggaccccagc
ccgaatggctttggagttaagttggagaatctacagatgtctccgccaagttctaaaatc
aacggaaatgattcgaagccggtatttcttacgttgaccaatgggcatagtaagggcaaa
ctgtcgggagatgaggggtccgaggacggggacgatttcgataccccaccgatactgaaa
gaactccagtcacttaacaccgaggaagcagcagaacagagggaagaagttgaccgaata
ttagccgaggacccctggcgtgccgcccgcatgatcaaaggctacatgcaacagcacaac
ataccacaacgtgaggtggtggatgtaactgggctaaatcagtctcacctctcacagcac
ctcaacaaaggcacgcccatgaaaactcagaagcgagcggcgctctacacctggtatgtc
aggaaacagcgggaagttctcagacaattcaaccaggcagtgcaaggttctgacagcaat
atgaccgagaaaggcagtcaggatcaggtgctgtttttcttcccagagttcaaccctcct
ggtcagggtatggggcaacaaggggaggaggtgggctctgaaccctcctgcaagaaaatg
agacggaaccgttttaaatgggggcctgcatcccaacagatcctctaccaggcctatgaa
agacagaagaaccccagcaaagaggagcgggaggcgctggtggaggagtgcaacagggct
gagtgtcttcagagaggggtgtctccatctaaagctcatgggctgggctctaacctggtc
actgaggtacgggtctataactggtttgccaaccggcgcaaggaggaggccttccgtcag
aagctggcgatggacgcctaccccatacccacccacagcatgaaccctctcctgtctcac
agccacaactccccacaccaccacagctcccagatcagcgcatccccccctagtaagatg
caagtgcggtacagccaacagggacccggtgaggtcagctcctcgacgaccatcagtcac
cacggcagcatggcgaccagccagtcggtgttacagcaggtgtctccgggaggcttggac
cccagccacagtctgctgtcacctgacgccaagatgatgtctgcgtcaggtggaggcctg
ccacctgtgagcacgctgaccaacatccacagctcccaccacacacaccagcagacacag
aacctcatcatgcctctctctggagtcatgaccatcgcacagagtctgaacacgtcgcag
tcagtgcctgtgatcaacagcgtggcggggagccttgcagcgctgcagccggtgcagttc
tcccagcagctccacagtccccaccagcatggcctgatgcagcagtcccccagccacatg
aaccagcagcccttcatggccactgtgactcattcacacagtcagtacctgcctcttatg
taccctcataagcaggagccaccgcagtattctcaccagtcacggtttccctcaaccatg
gtggtgacagacgccaacagcctcagtactctcagctccatgtcatccagcaaacaggat
tctaccgtaaacaagatggtgcaactggggggtctctcctggtgtcctcttcaagcctgg
tga
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