Oncorhynchus tshawytscha (Chinook salmon): 112266205
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Entry
112266205 CDS
T05605
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112266205 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112266205 (dhx36)
03012 Translation factors [BR:
otw03012
]
112266205 (dhx36)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112266205 (dhx36)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112266205 (dhx36)
Translation factors [BR:
otw03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112266205 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
AAA_19
NB-ARC
ATPase
AAA_16
NPHP3_N
DUF7428
Motif
Other DBs
NCBI-GeneID:
112266205
NCBI-ProteinID:
XP_042152395
LinkDB
All DBs
Position
LG13:85427149..85490071
Genome browser
AA seq
1102 aa
AA seq
DB search
MSYGGYGGRGGRRGGRRGGRGFGRDGSRERWDRLAGSSGGGHPRSTETESREDRGERGGR
GGGPNRPPPHLKGREIGLWYAKWGGLKRKENERKSRAVVQMDESREQHITNLLNTVQRGP
TCPAREAHPSTSEHWRSTPSAPDRGGHCYFDGDEPSQDVLKIDLKQEKKKEDEERPVQNT
PLTSQRYFPQDVLQAEPQEEREEKERRGKDKDLEYLFQEVVRENALDQQLKRDLERKKAD
SKYLDMLKFREKLPSFGKKEELVELIRSSQVLVVSGETGCGKTTQVTQFILDDYIERGMG
SVCRVVCTQPRRISAISVAERVAAERAESVGDGNSCGYQIRLQSRLPRKQGSVLYCTTGI
ILQWLRSSPLLSTISHLVLDEIHERNLHSDVLLIIVKDLLRVRQDLKVILMSATLNAEKF
SKYFNNCPMIHIPGMTFPVQEFLLEDVLEMIRYRPQKKEQRPRWKRGFMQGQNSRPEKDQ
KEAEYKESWPCYARTLRDKYSDRTIDVLEMMDDDDKIDLELIVQLIRHIVLSQEEGAILV
FLPGWDNISGLNDLLMAQQMFKSDRFVIIPLHSLMPTVTQTSVFKRPPPGVRKIVIATNI
AETSITIDDVVFVIDGGKIKETHFDTQNNISTMTAEWVSLANAKQRRGRAGRVCPGKCYH
LYNGLRASLLDAYQLPEIMRTPLEELCLQIKILKLGPIAEFLRKALDPPTEEAVTLAITH
LMDLNALDRSEALTPLGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFFI
PMVIIHVIVGAHTHIHFRYSHLSLSQGKEKMADFRRRTLSRDSKSDHLTIIYAFTGWEEA
KRRGYKFEREFCWDNFLSANTLQMLHNMKGQFAEHLLGAGFTSSKNPKDPESNTNSDNEK
LIKAVIVAGLYPKVAMIKPSGSKKRPVRVYTKTDGKVCIHPKSVNAEETQFNYTWLIYHL
KMRTSSIFLYDCTEVSPFSLLFFGGDVTIQMDQDQETIAVDDWIVFQSPARIAHLVKNLK
KELDSLLEEKIRSPAPVDWSNRQSKDCAVITAIIDLITTQERPNVNARNTEPRGRGQYHN
NDDGDEYENCCISSQPREKLRP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggaggttatgggggcagaggcggccgacgaggtggccgaagaggaggtcga
ggattcgggcgggatgggagccgggagaggtgggaccgcctagctgggtcgagtggtggt
ggacacccgcggagcaccgaaacggagtcgagggaggaccggggagaacgaggagggaga
ggtgggggaccaaaccgtccacccccgcatctaaagggacgggagatcggactgtggtac
gccaaatggggaggcttgaagaggaaagaaaatgagagaaaatcgcgggcagtggttcag
atggatgagtccagggaacagcatatcactaatctgctgaacactgtccagagaggaccg
acatgcccagctagggaggcccacccctccacatctgagcactggcgttcaaccccgtca
gcaccggacagaggcggccactgttactttgatggtgatgagccctctcaggatgtcctg
aaaattgatctcaaacaagagaagaagaaggaggatgaggagaggccagtacagaacact
ccactcacatcacaacgttacttcccacaggatgtccttcaagctgaaccccaagaagag
agggaggagaaggagaggagagggaaggataaagacctggagtacttgtttcaggaggtg
gtcagggagaatgccctggaccagcagttaaagagagatctagagaggaagaaggcagac
tctaaatacctagacatgctgaaattcagggaaaagcttccatcctttggaaaaaaagag
gagttggtggagttgatcaggtccagccaggtgctggtggtcagtggagagacggggtgt
ggtaagaccacccaggtgacccagtttatcctggatgactacatagagaggggcatgggt
tcagtctgccgggtggtctgcacccagccacgtcgcatcagtgccatatctgtagcggag
cgggtggctgcggagagggctgagagtgtaggggacgggaactcatgtggttatcagatc
cgcctgcagagtcggttaccacggaaacagggctcagtgctgtattgtacaacgggtatt
attctacagtggcttcgctcttcccctctgttgtccaccatcagccacctggttttggat
gaaattcatgagaggaaccttcactctgatgttctactcatcattgttaaagacctgctc
cgagtccgacaggacctcaaggtcatcctcatgagtgccacgctcaacgctgagaagttc
tccaaatactttaataactgtcctatgatccacatcccggggatgaccttcccagtgcaa
gagttcctactggaggatgtgttggagatgattaggtaccgtccccagaagaaggagcag
aggcccaggtggaagagaggtttcatgcagggtcagaactccagaccagagaaggaccag
aaagaggcagagtacaaggagagctggccctgctacgcccgcacactacgagacaagtac
tctgacagaaccatagatgtgttggagatgatggacgatgatgataagattgaccttgag
ctcatcgtgcagctgatcagacatatcgtgctaagccaggaagaaggagccatcttggtg
ttcctgccaggttgggacaacatcagtggcctcaatgacctcctcatggctcagcagatg
ttcaaatcagatcggtttgtgatcattcctctgcactccctgatgcctactgtcacccag
acctcggtgttcaaaaggccccctccaggagtcaggaaaattgtcattgccaccaatatc
gctgagaccagtattaccatagatgatgtggtgtttgtgatagatgggggaaagattaag
gagactcactttgacactcagaacaacatcagcactatgactgcagagtgggtcagcctg
gccaatgccaaacagagaagaggacgcgctggcagggtgtgtccagggaaatgttatcac
ctgtataatggcctgagggccagtcttctggatgcctaccagctacctgagatcatgcgc
acaccactggaggaactgtgtctgcagatcaagatcctcaagctgggtccaatagcagag
ttcctgaggaaagctctggaccctcccacagaggaggctgtcactctggccatcacacac
ctgatggacctcaatgctctggaccgctcagaggctctgaccccgttaggattccacctg
gccaggctgcctgtagagcctcacatcgggaagctgatcctgtttggagctctgctgggc
tgtctggaccctgtcctcactatcgctgcctctctcagcttcaaggaccccttcttcata
ccaatggtgatcatacacgtgatcgtaggcgcacacactcacatacattttaggtactca
catctctctctctctcagggtaaggagaagatggcagactttaggagaagaactctgtcc
agagactcaaagagtgaccacctcaccatcatctatgccttcacaggctgggaggaagct
aagcgacgcggctacaagtttgaacgagagttctgctgggacaacttcctgtcagccaat
acactccagatgctgcacaacatgaagggtcagtttgccgagcacctgctgggggctggc
ttcaccagcagcaagaacccaaaagaccctgaatctaacactaactcagataatgagaag
ctgatcaaggcagtgatagtggcaggtctctaccccaaagtggccatgatcaaacccagc
ggaagcaagaagagaccggtgagggtgtatactaaaactgatgggaaggtgtgtattcac
cccaagtcagtgaatgctgaggagacccagtttaactacacatggctcatctatcacctc
aagatgaggaccagcagtatcttcctttacgactgtacggaggtgtctccattctccctg
ctgttctttggaggtgacgtcaccatacagatggatcaggaccaggagaccatcgccgtg
gacgactggatcgtcttccagtcccccgcacgcatcgctcacctcgtcaagaatctgaag
aaggagctggactctctattggaagagaagatccgaagccccgcccctgtggactggagc
aaccgccaatccaaagactgtgccgtcatcacagccatcatagacctcatcaccacccag
gagaggcccaacgttaacgcgaggaacactgagcctagaggacgcggccagtatcacaac
aacgatgatggtgacgagtacgagaactgctgcatctcttctcaacccagagaaaagctc
aggccatag
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integrated database retrieval system
