Oncorhynchus tshawytscha (Chinook salmon): 112266208
Help
Entry
112266208 CDS
T05605
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112266208
03041 Spliceosome [BR:
otw03041
]
112266208
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112266208
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
112266208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
112266208
NCBI-ProteinID:
XP_042152431
UniProt:
A0AAZ3R6Z4
LinkDB
All DBs
Position
LG13:87663542..87710979
Genome browser
AA seq
858 aa
AA seq
DB search
MDSVNAFNLELFTMIDMKPPISRAKMMSVTKSAIKAIKLYKHVVQIVEKFIKKCKPELKV
PGLYVVDSIVRQSRHQFGVDKDVYGPRFQKNFTPTFQNLYLCPHDDKSKIIRVLNLWQKN
AVFEMDVVQPLLDMAAGSLAPTPSPQEDLQAQPQVPSASIASVQTPVSSASIAAALPQVS
RASIAAALPQLPPQLQNPEALAAVAQLFQSGQGHELQKILQRFQPGQQTPPVVPNTMPDQ
NHPHVVQSQHNTHHPPLNTHQTHPTEQKNSLAKKLLDRFDYDDEPEEVKREETNPLVPGN
QYDGHFPGPMQPDMEQQFQGQPGRQQTPVGGYPGLNKGYSQSQHTDQGNSREREDPSGRR
EGRQRGHGRRSRSRSGSRSPRRKRSPGSPSRKPRHSSQRSGSRSRESRWNSPRSRSQERK
EREKDKDRRQKGLPSIKSQTLSVCTTTLWVGQLDKKTSQQDVMCLLEEFGQIDSINMIPP
RGCAYIVMVHRQDAYRALHKLGRGSFKVNQKAIKIAWALNKGIKATHKKFWDVERGVTYI
PWSKVKMEELEGSREGGMLDADTLCPEWGDDVKELTKPGGLNNGGGVDAMETEGAATAHV
QVPPVQPIGSVGGPPGPPTPSLTPGGPPSFLPAGFNPTQMPPGFPPPVVGGPRSTTDDSG
STDKAGGSGGLSGPSDAPDSQLGAPGPGAVMSPPGPAVLLGPRMAMMTMQPRSGLPPPQL
QPTFAPHLPPPNMPPMMMGSRGPNPMFPPRGGPPGGFRMPMGHQSMEDFPHGPPRHPFQP
GPPRHPFQPGPPGEEGGNWEGGRHFRGERPGFGGHDRDWGRFGEQVRGFPRGGRGGGWSR
GGPEGRDRFMNRQDRFER
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggattccgtcaacgctttcaacttggagttattcaccatgattgacatgaagcctcca
atatcacgagcaaagatgatgtcagtcactaaatcagcaataaaggctatcaagctatac
aagcatgtcgtccagattgtggagaagttcatcaagaagtgtaagccagaactgaaggtt
cctggtttatacgtggtggattccattgtccgacagtcccgacatcagtttggagtggat
aaggacgtctatggacccaggttccaaaagaacttcaccccgacattccagaacctctac
ctctgtccacacgatgacaagagtaagatcatccgtgttctcaacctgtggcaaaagaac
gctgtatttgagatggacgtcgtccagcccctgttggatatggctgctggctccttagcc
cctactccctccccccaggaggacctccaggcccagccccaggtgcccagtgcctctata
gcatcagtccagacaccagtctccagtgcctccatagcagcagccctgccccaagtctcc
agggcctccatagcagcagccctgccccagctccccccacagctccagaaccctgaggcc
ctggctgccgtggcacagcttttccagtctggacagggacatgagcttcagaagatcctc
cagaggttccagccggggcaacagactccccctgtggttccaaacaccatgcctgaccag
aaccacccacatgtggtccaaagccagcataatacacaccacccaccgttgaacacacac
cagacacatcctacggagcagaagaactcactagctaagaaactcctggaccgttttgat
tatgacgacgaaccagaagaagtgaagagagaggagacgaatccccttgttccagggaac
cagtatgacggccattttcctggtccgatgcagcccgacatggagcaacagtttcagggc
cagcctgggagacagcagacacctgttggaggataccctggtctgaacaagggctacagc
cagagccagcacactgaccagggaaactccagagaaagagaagatccgtctgggaggagg
gaggggaggcagcggggtcacggcaggaggtcacgctccaggtctggctctcgttctccc
aggagaaagaggtcccccggttctccctcccggaaaccccgacattcctcccagcgctct
gggtcccgctccagggagagtcgctggaactcccctcgctcccgctcacaggagaggaag
gagagagagaaggacaaagaccgtagacagaaaggtctgcccagcatcaagagccagaca
ctcagtgtttgcaccacgactctgtgggtgggccagctggacaagaagacttctcagcag
gacgtcatgtgtttactagaggagtttgggcagatagactccatcaatatgatacctcct
cgtggatgtgcctacatagtgatggtccacaggcaggatgcctacagagctctacacaaa
ctcggcagaggatccttcaaggtcaaccagaaggctatcaagattgcgtgggccttgaac
aagggtataaaggcgacgcataagaagttctgggatgtggagcgaggcgtcacctacatc
ccctggagcaaggtgaagatggaggagctggaggggtccagggagggaggcatgctggac
gcagacacactctgtccagagtggggagatgatgtgaaggagctgactaaaccaggagga
ctgaacaacggaggaggagtggatgccatggaaaccgagggagctgccactgcccacgta
caggtgcctccagtccagccaatagggtctgtgggtggtccccctggccccccaaccccc
tctctcacccccggtggacccccttccttcctgcccgctggcttcaaccccacacagatg
cctccaggtttccctccaccggtggtgggaggaccaaggagcaccacagatgactcgggg
tctacagacaaggctggagggagtggtggcctctctggcccctcagacgctccagacagc
cagctgggagctccagggccaggggccgtgatgagtcctccaggcccagcagtgttacta
ggtcccaggatggccatgatgaccatgcagcctcgttcaggactaccaccccctcaactc
cagcccacttttgcccctcacctccctccccccaacatgcccccaatgatgatgggctcc
aggggccccaaccccatgttcccccccagagggggccctccaggtgggttcaggatgccc
atgggccaccagtccatggaggactttcctcacggaccccccagacatcccttccagcct
ggaccccccagacatcccttccagcccggaccccccggggaagaaggtggcaactgggag
ggcgggagacacttcaggggcgagaggccagggttcgggggacatgacagggattggggg
aggtttggggagcaggtgagagggtttccgagaggaggaagaggagggggttggtccaga
ggtgggcctgaggggagggaccgcttcatgaatcgacaggatagatttgaacggtga
DBGET
integrated database retrieval system
