Oncorhynchus tshawytscha (Chinook salmon): 112266302
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Entry
112266302 CDS
T05605
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04148
Efferocytosis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112266302 (vps16)
04148 Efferocytosis
112266302 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112266302 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112266302 (vps16)
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112266302 (vps16)
Hops complex
112266302 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Spatacsin_C
DUF740
Sipho_tail
Motif
Other DBs
NCBI-GeneID:
112266302
NCBI-ProteinID:
XP_042175415
LinkDB
All DBs
Position
Unknown
AA seq
834 aa
AA seq
DB search
MAFITANWNPLGEAFYRKIELYEMGWSLRDGLKECLVAAAPYGGPIALLRQPQRPSSSAR
PQLEIYSSSGANMASFPWKSGPVRQLGWTVCDDLLCIQEDGTVLIYDLFGAFKRHFSMGN
EVVQNQVLEAKVFHSPYGTGVAIVTGASRFTLATNIDDLKLRRLPEVPGLQGAPSCWAVL
TQDRQTKVLLANGADLYILDNTSCTPVTPPGLSPQACSIVNMAVSFSYKYLALFTDSGHL
WMGSANLKDKLSEVDTKVRTPPKQMVWCRRPKSQQPSVVIMWDRLLLVAGECTDTIQYTL
DEESVCVAELDGVRIVGGSRHELLQEVPSACQDIFKIASMAPGALLLEAHKEYEKSSQKA
DEYLREIKEQSVLGEAVRQCVEAAGYEHEPETQKTLLRAASFGKCFLSNYPPEPFVSMCR
DLKVLNSVREYTVGIPLTHTQYKQMTVQVLIDRLVYRKLYPLAIEICRYLKTPEYQGVSR
VLKHWACCKVQQKEEPDESIAHAVSVKLGEAAGISYSEIAARAYECGRTELAIKLLEFEP
RSGEQVPLLLKMKRSQLALSKAIESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKHQEQDTLKDLFNQDDDHQELGNFYVKASYKEKKLEARLSLLQSAVDEYNKAKNE
FAAKATEEEMKLLRFQRRLDEKGEALLGLSLQETLHALLTSNFHKQAEQLYRDFRVPDKR
YWWLKLTALAEKDDWEEMEKFAKSKKSPIGYLPFVEVCVKQHNKYEAKKYVSKVTPEQKV
KAHLAIGDLEGAAEAAIERRSEGEISTVLSRCSPTTDRALLERLNRARSTAAKK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcatttataacggcaaactggaatccgctcggggaagcgttttacaggaagatcgag
ctgtatgagatgggatggagcttgagagatgggctcaaggaatgtctggtggcagcagcc
ccatacgggggaccaatcgctctcctaaggcagccacagagaccttcctccagcgcacgg
ccccagctggagatctattcctcctcaggcgcgaacatggccagcttcccgtggaagagt
ggcccagtgagacagctgggttggacagtgtgtgatgacctactgtgtatccaggaggat
ggcactgtcctcatctacgacctgtttggtgccttcaaaagacacttcagcatgggcaac
gaggtggttcaaaaccaggtgctggaagccaaggtgttccactcaccctatggaactggt
gtcgccatagtaacgggagcctcacgcttcaccctggccacgaacattgacgacctgaag
ctgaggagactcccggaagtcccaggcctccagggggcaccctcctgctgggcagtgctc
actcaggacagacagaccaaagtgctgctggccaacggagctgacctctacatactggac
aacacatcctgcacccctgtgacccctccaggcctctctccacaggcctgtagcatcgtg
aacatggctgtgtcattcagctataagtacctggctctgttcacagactcaggacacctg
tggatgggctcagccaacctcaaggacaagctgagtgaggtggacaccaaggtgaggacc
ccgcctaaacagatggtctggtgcagaaggccaaagagccagcaaccctctgtggtcatc
atgtgggacaggctcctactggtggccggagagtgtacagacaccatccaatacactctg
gatgaggagagtgtgtgtgtagcagagctggatggagtgaggatcgtaggagggtccagg
catgagctgctgcaggaggtgccctcggcctgccaggacatctttaaaatcgcctccatg
gctcctggagctttactactggaggcacacaaggagtacgagaagtccagtcagaaggca
gatgagtacctgagagagataaaggaacagagtgtattgggggaagcggtgagacagtgt
gtggaggctgctgggtatgaacatgaaccagagacccagaaaacactgctcagggctgcg
tcctttgggaagtgttttctcagtaactacccaccagagccgtttgtcagtatgtgtcga
gacctgaaagttctcaactctgtccgggagtacactgtggggatccccctcacacacaca
cagtacaaacagatgactgttcaggtcctcattgacaggttggtgtaccgtaagctgtat
cccctggccattgagatctgtcgctatctgaagacaccagagtaccagggagtcagcaga
gtcctcaaacactgggcctgctgcaaggtccagcagaaagaagagcctgatgagtccata
gcacatgctgtcagtgtgaagctgggcgaggcagcaggaatctcctactctgagatcgct
gccagagcatatgagtgtggcaggacggaactggccatcaagttgttggagtttgagcct
cgttctggggagcaggtcccccttctactgaagatgaagaggagtcaactggccctgagt
aaagctatagagagtggagacacagacctggtttacacggtggtgacatacctgaagaac
gagatgaacagaggagacttcttcatgacgctcagaaaccaaccggtagctctgagcctc
taccggcagttctgtaagcaccaggaacaggacacactgaaggatctgttcaaccaagac
gatgaccatcaggagctgggtaacttctacgtcaaggccagttacaaggagaagaagctg
gaggctcgcctgtctctgctgcagagtgctgtggacgagtacaacaaggccaagaacgag
tttgcagccaaggcgacagaggaggagatgaagctgctacgtttccagaggcgtctggat
gagaagggagaggctctgctgggcctgtctctccaggagactctgcatgccctcctcacc
tccaacttccacaagcaggctgagcagctctacagggacttcagggtgccagacaaaagg
tactggtggctgaagctgaccgctctggcagagaaggatgattgggaagagatggagaaa
tttgctaagagcaagaagtcccccatcggctatctaccctttgtggaggtgtgtgtgaaa
caacacaataagtacgaggccaaaaagtatgtttccaaggtgaccccagagcaaaaggtc
aaagcccacctggccataggtgatctggagggggcagccgaggcagctatagagaggagg
agtgaaggagagatcagcactgtcctgtcccgctgttctcccaccacagaccgagccctg
ctggagagactcaaccgagccagatccactgctgccaaaaagtga
DBGET
integrated database retrieval system
