Oncorhynchus tshawytscha (Chinook salmon): 112266445
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Entry
112266445 CDS
T05605
Symbol
capn1b
Name
(RefSeq) calpain-1 catalytic subunit
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04141
Protein processing in endoplasmic reticulum
otw04210
Apoptosis
otw04217
Necroptosis
otw04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112266445 (capn1b)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
112266445 (capn1b)
04217 Necroptosis
112266445 (capn1b)
04218 Cellular senescence
112266445 (capn1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112266445 (capn1b)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
112266445 (capn1b)
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C2: calpain family
112266445 (capn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
Motif
Other DBs
NCBI-GeneID:
112266445
NCBI-ProteinID:
XP_024299684
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Position
LG02:complement(58007237..58036112)
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AA seq
704 aa
AA seq
DB search
MYPFGGVSARIQRERLHAEGMGTNERALKFLNQDYEALKQECLESGCLFEDSCFPPEPPS
LGFKELAPHSSKTQGVEWMRPTEFSDNPEFILGGATRTDICQGALGDCWLLAAIASLTLN
EKLLHRVVPHGQSFQDNYAGIFHFQFWQFGEWVDVVIDDRLPVKDGELMFVHSAEGNEFW
SALIEKAYAKLSGSYEALSGGSTTEGFEDFTGGVAEFYELRKAPKDLYRIIGKALERGSL
LGCSIDITSAFDMEAVTFKKLVKGHAYSVTGLKQVDFRGRMERLIRIRNPWGQVEWTGAW
SDNSSEWNAIDPTEREDMNCHMEDGEFWMPFQEFLRQFSRLEICNLTADALSDDSQSFWN
TIKFDGGWRKGSTAGGCRNHPNTFWINPQYKITLLEEDDDPEDEEEACSFLVALMQKDRR
RYRRQGQDMHTIGFAIYEIPEEFKGCQSVHLKKDFFLKHSSCARSETFINLREVSARLRL
PPGEYLVVPSTFEPGKEADFVLRVFTEKQSETQELDDDVVANFEDEEDISESDIEDSFRA
MFAQLSGEDMEISVRELRTILNRVVTKHRDLKTDGFSMESCRGMVSLLDKDGSARLGIVE
FQILWNKIRKWLGIFRQFDLDKSGCMSSYEMRLALESAGFKLNNGLNQVLVARYAENEVI
DFDNFVCCLVKLEAMFKAFQALDREGAGTAEMNVTEWLYMTMCG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtacccattcggaggggtctcagcgcgcatccagagggagagactacacgccgaggga
atgggaaccaacgagcgggcgctgaagttcctcaaccaggactacgaggccttgaagcag
gagtgcctggagagcggctgcctgttcgaggactcctgcttcccccccgagccaccctcc
ctgggcttcaaagagctggccccccactcatccaaaacccagggcgtggagtggatgagg
cccacagagttttcagataaccctgagttcattttgggcggcgccacaaggactgatatc
tgtcaaggagcactgggtgactgctggctcctggcagccattgcttccctcacccttaat
gagaagctgctacacagggtggtccctcatggtcaatccttccaagacaactacgctggc
atcttccacttccagttctggcagtttggagagtgggtggatgttgtcattgatgatcga
ctgcctgtcaaagatggcgagctcatgtttgttcactctgctgagggtaacgaattctgg
agtgccctgattgagaaggcttatgccaaactgagtggctcctatgaggccttgtctggt
ggcagcaccacagagggctttgaggacttcaccggtggcgtggcagagttttacgagcta
cgtaaggcacctaaggatctgtaccggatcatcggtaaagccctggagagaggctccctt
ctgggctgctccattgacatcaccagtgccttcgacatggaggcagtgacctttaagaag
ctggttaaaggccatgcctactctgtcacaggtctgaagcaggtggatttccggggtcgc
atggagaggttgatccgtattcgtaacccctggggtcaggtggagtggaccggggcttgg
agtgataattcgtctgagtggaatgcgattgatccaacagagagggaggacatgaattgt
cacatggaggacggggagttctggatgcccttccaggagttcctgcgccagttttcccgg
ctggagatctgtaacctgacagcagatgctctgagtgatgacagccagagtttctggaac
accatcaagtttgacggaggctggaggaagggcagcacggctggaggctgccggaaccac
ccaaacaccttttggatcaacccccagtataagattaccctgctggaggaggatgatgac
cctgaggatgaagaggaggcctgcagcttcttggtggctctcatgcagaaggataggcgc
cgttaccgacgccaggggcaggacatgcacaccattggctttgccatctacgagattcca
gaagagtttaagggttgtcaaagtgttcatttgaagaaagacttcttcttgaagcactca
tcatgtgcacgttctgagacctttatcaacctgagggaggtgagcgcacggctgcgcctg
ccacccggggagtacctggtggtaccctccaccttcgaacctgggaaagaggctgacttt
gtcctcagagtgttcactgagaagcagtcggagacacaagaactggatgatgatgtggtg
gcaaactttgaagatgaggaggacatctcagagagtgacattgaggactcattcagggcc
atgttcgctcagttatctggggaggacatggagatctctgtccgtgagctcaggaccatt
ctcaatagggtggtgaccaaacacagggacctgaagactgatgggttcagcatggagtcc
tgtagaggcatggtcagcctattagacaaagatggcagcgctcgccttggtatagttgag
tttcagattctgtggaataagatcaggaagtggctgggaatcttccgccagtttgatctg
gacaagtctggatgtatgagctcctatgagatgcgtctggccttggagtctgctggattc
aaactgaacaacgggctgaaccaggtgcttgtggccagatatgctgaaaacgaggtcatc
gactttgataactttgtctgctgtctggtcaagctagaagccatgttcaaggccttccag
gcgttggatagagaaggcgctggaactgctgaaatgaatgtcacagagtggctgtatatg
accatgtgtggttga
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