Oncorhynchus tshawytscha (Chinook salmon): 112266469
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Entry
112266469 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112266469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112266469
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112266469
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112266469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
PRY
zf-C3HC4_3
Ig_DSCAM-DSCAML_C
zf-RING_2
Pur_ac_phosph_N
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
112266469
NCBI-ProteinID:
XP_024299723
LinkDB
All DBs
Position
LG14:7264108..7329948
Genome browser
AA seq
685 aa
AA seq
DB search
MEALESELTCPICLELFEDPLLLPCAHSLCFGCAHRILVSHCASNEPVQSIGAFQCPTCR
YVISLSPQRGLEGLKRNVTLQNIIDRVQRAASSGPLALLPHSGPNSPSEDAGRFALALIP
ASTAMTSPGTPPSHVQCQFCEQDPPQDAVKTCVTCEVSYCDECLRATHPNKKPFTGHRLI
EPMSDCHLRGLQCLEHEEEKVNMYCVTDEQLICSLCKLVGRHRDHQVAALSDRYEKLKQA
LDSNLSHLVKRNNELEGLMGKLIQTCQHVEVNASRQEGKLMEECDLLIDIIQQRRQIIGT
KIKEGKAVRIRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSITERVSMA
TASSQVLIPEINLTDTFDTFALDFTKEKKLLESLDYLTAPSPPGIREELCTASYDTITVH
WTSDDEFTVHSYELQYAIFTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFI
VKAINQAGARSSEPGTLKTNSQPFKLDPKSAHKKLKISHDNLTVERDETASKKGHGQERF
TSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLCRCNN
SWVVRHNSKELAIEPSPHLRRVGVLLDYDAGSLTFYDAVGSQNLHTFHVSFAQPVCPVFN
VWNKCLTVLTGLPIPEHLEGLETQD
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgctggagtcagagctgacttgcccaatctgcctcgagctctttgaggaccca
ctgctcctgccctgtgcccacagcctgtgcttcggctgcgcccatcgcatcctggtatcc
cactgcgcctccaacgagcccgtccagtccatcggagcattccagtgccccacctgccgc
tatgtcatctctctcagtccgcagcgtggcctagaaggactgaaacgcaacgtcaccctc
cagaacatcatcgaccgcgtccagagggccgcctcctccggccccctggccctgctgccc
cacagcgggcccaactcccctagcgaggacgccgggcgattcgccctggccctgatcccc
gcctccactgccatgactagccccgggacgccgcccagccacgtgcagtgccagttctgc
gagcaggacccgccgcaggatgctgtcaagacgtgtgtgacgtgcgaagtgtcatactgt
gatgagtgcctgcgcgccacgcaccccaacaagaagcccttcacgggccaccgtctgatc
gagcccatgtcggactgccacctgcgggggctgcagtgcctggagcacgaggaggagaaa
gtgaacatgtattgcgtcactgacgaacagctcatctgctctctgtgcaaactggtagga
agacaccgagaccaccaggtggcggccttgagcgaccgctacgagaaactcaagcaagcg
ttggattccaacctgagtcatttggtcaagaggaataatgagttggaagggttgatggga
aagttgatccaaacctgtcaacatgtagaggtcaatgcatcgcggcaggagggaaagctg
atggaagaatgcgacctcctgattgacatcatccagcaaaggaggcagatcattgggacc
aaaatcaaggagggaaaggcggtccggatcaggaagctagcccagcagatctccaactgt
aagcagtgcattgagaggtcctctgctctcatcacccaggccgaccagaccctgaaggag
acggaccacgcccgcttcctccagaccgccaagagtatcaccgaaagggtttccatggcg
accgcctcctctcaggtcctgattccagagatcaacctaacggacacgtttgacacgttc
gctctggacttcaccaaggagaagaagctgctggagagcctggactacctcacagctcca
agtcctccgggcatcagagaagagctctgcactgcatcgtacgacaccatcaccgtccac
tggacctcagacgacgagttcacagtgcattcctatgagctccagtatgctatcttcaca
gggcaagccaacgttgtcagcctgtgtaactctgcagacagctggatgattgtgcctaac
atcaagcagaaccactacaccgtccacggcctgcagagcggcaccaagtacatcttcatc
gtcaaagccatcaaccaggcaggtgcccgcagcagtgagccagggacactcaaaaccaac
agccaacctttcaagctggaccccaagtccgcccacaagaagctgaagatctcccatgac
aacctgacggtggagcgcgacgagacggcatcgaagaaaggacacggccaggagcgcttc
accagccagagtagctacggcgtcgtcggcaatgtttacatcgacagtggacgccactac
tgggaggccctgattggaggaagcacatggtatgcggtgggcatcgcctacaagtcggcc
cccaagcacgagtggattggcaagaactcggcctcctgggtcctgtgccgctgcaacaac
tcgtgggtggtgcgtcacaacagcaaggagctggccatcgagccttcgccccacctgcgc
cgcgtgggtgtcctgctggactacgacgccggctcgcttaccttctacgatgccgtgggc
tcacagaacctgcacacgttccacgtgtccttcgcccagcccgtgtgtcccgtcttcaat
gtgtggaacaagtgtctgactgtccttacgggtctgcccatccccgaacacctagaaggg
ttggaaacccaggactga
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