Oncorhynchus tshawytscha (Chinook salmon): 112266769
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Entry
112266769 CDS
T05605
Name
(RefSeq) latent-transforming growth factor beta-binding protein 4 isoform X1
KO
K08023
latent transforming growth factor beta binding protein 2/3/4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112266769
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
112266769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF
EGF_3
FXa_inhibition
hEGF
Plasmod_Pvs28
EGF_2
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
112266769
NCBI-ProteinID:
XP_024300318
LinkDB
All DBs
Position
LG14:22586969..22636474
Genome browser
AA seq
1905 aa
AA seq
DB search
MLQLRPRLRLLPLLYLCFVFFPLPASNQTAGHRGGTAAGAGRRGAERIKVLFTPTICKVR
CTQGRCTNFCEQGNVTTLYNSEQGGRAALGPGFRVFLCPMLCQNGGVCIQKDRCLCPPTF
TGKFCHIPVATPSTNDIEKPPRIPSVLASQQLLTQSEYILPLQSQQQSHSQPSGASGSSM
VKVRVQHPPEASVKIHQVLKVGYGPGTVREQSETVTWSAGLSGARTSVLPGERAEAPPPK
PRVQAQTFHGDSTYTESSGFKYCFREVRNGQCSSPLPGLRSQDTCCRGIGLAWGINECVL
CPPNTGNGVDGSCPAGFERINGTQCVDVNECLQPGFCENGNCVNTRGSYSCVCRQGYILD
ASHGICISRKVISEDKGQCYRILNSGSGRGSCSVPILRNITKQICCCSRVGKAWGKNCER
CPYFGSVAFKEICPAGPGYHYSASAIKFNQRVVEQHGTGGPPVISQSTPQTRPQQPASSG
AQTPQTSHQQPSSSGFFTPQTRPQQPDGRALIPQTRPQQPSSGGSLSPQGRPQIPAISVT
AGPTRVVTARTPTQTKRPPVDQRPISPVRPAQPLPSPVTPRPPIPRPVRGVCETMPQVCG
QGRCVDQPGGRHTCICNEGYQHNAQQTHCQDIDECRASPPPCSSGRCQNTEGGYRCSCPS
GYQPGPRGTSCIDVNECIQAPSPCSVGECENTPGRYRCVCPAGFRANFQQTQCQDIDECR
QVPNPCNNGRCENSPGSFKCVCRTGYKLEGNTCKDVDECEDPLKCPGQACVNSPGSYKCV
SCPPGFGLLNEQCRDVDECRQTPSLCTNGRCENTPGSYRCVCHTGYKLQGKACTDVDECE
DPLRCPGQACVNSQGSYNCVSCKPGFSMINGQCSDIDECRQSPGPCNNGHCENTQGSYSC
ACLTGYRLHGDTCTDADECADPSQCPGQECVNSQGSYKCVSCKPGFGLIDRRCTDVDECL
HSPTRCANGRCENTAGSYKCACRSGFRLQGNTCTDVNECENALQCPGQECINSEGSFICV
ACSPGFVAGNGQCTDIDECRQTSNLCANGLCENTLGSYRCVCRTGFKLQGSVCIDVDECA
DSSQCPGQRCVNSEGSYKCIACKAGHRMQDGLCADVDECQSPDTCGAARLCVNTDGSYRC
DCQPGYRTTGLGRQCRDVNECLEGEYCFPRGECVNTEGSYRCVCSQGYTTSSDGSSCLDV
DECARSGPGVCQDGRCVNTEGSYQCQCQVGFTTNPEKTACLDVDECSEGAVCRTQRCENT
IGSYRCITSCEPGYRVTRTGECVDINECANETVCGEHAFCQNLIGTYQCMCDQGYTATSD
GKGCVDENECETMQGVCGAARCENVDGSFMCECPGEGEEFDTRSGQCLSTPRPGLPVFSG
GSSSSSSTTGLGPQRRPDASQLPPARAGELRECYYNTEEQSSCSVLARNTTQQECCCTVG
QGWGMGCQFDPCPQLGTAEHQALCPSGRGYVTGPGAFSYKDVDECKLFHPEVCKSGVCVN
NIPGYSCYCTSGYYYDNVFLECIDVDECEAGEDSCPGGICVNTLGSHFCTCVPPLVLDDT
QRSCVNSTGLAVDEKLSFCWQYVTPDLVCQSPLLGGQVTFTECCCLYGEGWGLQCALCPA
RDSEDYEARCNIFLRPPEFPPPFPDRYGPDPGPGRGGGGGYRVPYGPDSFPDPIPRRPEY
PRPDYDDYTPPGGSRSGFRGRTPSTFRVPESPYRQPSGYIPERYYDEDDYGPPDAPPRPP
FRTLPDPRSELSFGARPPLPIPEGLPLSLAPLPDSDPYSEEEEEEGPEPWRVGPPFPDRR
GPGGGPRRVYERQYEPYAGLSTEDCGILHGCENGRCIRVAEGYTCDCYEGYELDMTSMAC
IDINECEDPDSVCASGRCINTDGSYRCVCHRGYVMSRRPNHCVAA
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atgctccagctcagacccagactcaggctcctaccgctgctctacctctgcttcgtcttc
ttcccccttccagccagcaaccagactgccggccaccgaggaggaacggcagcaggggca
ggaaggagaggagctgagcgcatcaaggtgctcttcaccccgaccatctgcaaggtgcgc
tgcacccagggacgctgcaccaacttctgcgagcagggcaatgtgaccaccctctacaac
agtgaacaggggggccgggctgcgctgggaccgggcttcagagtcttcctgtgccccatg
ttgtgtcaaaacggaggggtctgcatccagaaggatcgctgcctctgcccgccaaccttc
accggcaagttctgccacatccccgtggccacgccctccaccaatgacattgagaagcct
ccgcgcatcccctcagtgctggccagtcagcagctgctgacccagtcggaatacattctc
cccctgcagagccagcagcagagccacagtcagcccagcggtgcgtctggctcatccatg
gtcaaggtgcgggtgcagcaccccccagaggccagcgtgaagatccaccaggtgctgaag
gtggggtatgggccaggcacagttagggagcagtcggagacggtcacctggtcagcaggc
ctctcgggggccaggaccagtgttctgccaggggagcgggccgaagccccaccacccaaa
cccagagtgcaggcccagaccttccacggtgactccacctacacagaatcctccggattc
aagtactgcttcagggaggtccgcaacggccagtgcagctcacctctcccaggactcagg
agtcaggacacctgctgccgagggattggcctggcctggggcatcaacgagtgtgtccta
tgtcctcctaacacaggaaatggagtcgatgggagctgtccggctggatttgagaggatc
aacggcacccagtgtgttgatgttaatgagtgtttgcagccaggcttctgtgagaacggc
aactgtgtgaacactcgggggagctacagttgtgtctgcaggcaaggatacatactggac
gcctctcacgggatctgtatctcccgtaaggtgatctcggaggataaaggccagtgctat
cgtatcctaaactctggctctggccgtggtagctgctccgtgcccatcctcaggaacatc
accaagcagatctgctgctgcagccgcgtgggcaaggcctggggcaagaactgtgagagg
tgtccctactttgggtcagttgctttcaaggagatctgcccagcagggcctggctaccac
tactctgcctctgccatcaagttcaaccagagggtggtggagcagcacgggactggaggt
ccccctgtcatatcccagagcaccccacagaccaggccacaacaaccagccagtagtggt
gcacagactccccaaactagtcaccaacaaccttcaagctcaggctttttcactccccaa
actagaccccaacagccagatggtagagctctcatacctcagaccaggccccagcagcca
tcgagtggaggctccctgtccccccagggcagaccacaaatcccagccatctctgttaca
gcaggacccacccgggtggtgacagctcgaacccccactcagaccaaacggcctccagtt
gaccaacggccaatatctccagtgagacccgcacagcccctcccatctccggtcacgccc
cgcccacccatccccaggccagtgcggggtgtgtgtgagaccatgccccaggtgtgtgga
cagggccgctgtgtggaccagcccggagggagacatacctgcatctgtaacgagggatac
caacacaacgctcagcagactcattgtcaagacatagacgagtgcagggcgtctcccccg
ccctgcagcagcggccgctgccagaacacagaagggggctacaggtgcagctgcccctct
ggataccagccgggaccccggggcaccagctgtatagatgtcaatgagtgcatccaggct
cccagtccctgttctgttggggagtgtgagaatacaccaggccgctacagatgtgtgtgt
cctgctggcttcagagccaacttccaacagacgcagtgtcaagatattgacgagtgtcgt
caggttccgaacccctgtaacaacggccgctgtgagaatagccctggtagcttcaagtgt
gtctgccgcactgggtacaagctagagggcaacacgtgtaaagatgtggatgagtgtgag
gaccccttgaagtgtcctggtcaggcctgtgtcaactctccaggatcatacaagtgtgtg
tcttgcccaccagggtttgggctgctcaacgaacaatgccgagatgttgacgagtgtcgt
cagacccccagcctttgcaccaatggtcgttgtgagaacactcccgggagctacaggtgt
gtttgccatacgggatacaaactacaaggcaaggcctgcacagatgtggatgagtgtgag
gaccctttgaggtgtcctggtcaggcctgtgtcaactctcagggttcttacaactgtgtg
tcttgcaagccaggcttcagcatgatcaatggacaatgctcagatatagatgagtgtcgt
caatcccccggcccatgcaacaacggtcactgcgagaacacccagggtagctacagctgt
gcgtgtctcactggctacagactacacggtgatacctgtacagacgcggatgaatgtgca
gacccgtcccagtgccctggccaggagtgtgtcaactcccagggctcatacaagtgtgtg
tcctgcaagccaggctttgggctgatcgacagacgctgcacagatgttgacgagtgcctc
cacagccccactcgctgtgctaacggtcgttgtgagaacacggctggaagctacaagtgt
gcgtgccgatctggcttcaggctacagggcaacacctgcacagatgtcaatgaatgtgag
aacgctctacagtgtcctggtcaggagtgtatcaactctgagggctccttcatatgtgtg
gcctgtagcccaggctttgtggctggaaatggacagtgtacagatattgatgagtgtcgg
cagacctccaacctatgtgccaacggcctctgtgaaaacactctcggtagctaccggtgc
gtttgccgcaccgggttcaaactgcagggcagcgtctgtattgacgttgatgaatgtgca
gactcctcacagtgtcccgggcaacggtgtgtgaattctgaaggctcctacaagtgtatc
gcctgcaaagctggccacagaatgcaagatgggttatgcgcagatgtggatgaatgccag
agccctgacacctgtggtgcagcgaggctgtgtgtgaacacggacggctcctatcgctgt
gactgtcaaccaggctacagaaccactggccttggacgccaatgtcgagacgtcaacgag
tgtctagagggggagtactgcttccccaggggagagtgtgtgaacacagagggctcctac
cgctgtgtgtgttcccagggttacaccaccagcagcgatgggagctcctgcctagatgtg
gatgagtgtgccaggtcaggcccgggggtgtgccaggatgggcgctgtgtcaacacagag
ggctcctaccagtgccagtgccaagtgggattcaccaccaacccagagaagacagcctgt
ctggatgtagatgagtgctcagagggagcagtgtgtcggacacagcgctgtgagaacacc
attggctcctaccgctgtatcacctcctgtgagccgggctaccgggtcacccgcaccgga
gagtgtgtcgatatcaacgagtgtgccaatgagaccgtatgcggggagcatgcgttctgc
cagaacctaattggaacataccagtgcatgtgtgaccagggctacacagccaccagcgat
gggaagggatgtgtggatgaaaacgagtgtgagacgatgcagggcgtgtgtggtgcggcg
cgttgtgagaatgtggatggctccttcatgtgtgagtgtccaggagagggggaagagttt
gatacgcgctcaggacagtgcctcagcacgccccgaccaggtcttccagtgttctctggc
ggctcctcctcgtcttcctccaccaccggcctcggtccccagcgtcggcccgatgcgtcc
cagctgccccctgcccgggctggcgagttgagggagtgttactacaacaccgaggagcag
agctcgtgcagcgtcctggcccgcaacaccacccagcaggagtgctgctgcaccgtgggc
cagggctggggaatgggctgccagttcgacccctgtcctcagctaggcacagccgagcac
caggcgttgtgccccagcggacgaggatatgtgactgggccaggagcgtttagctacaaa
gatgtggatgagtgtaaactgttccaccctgaggtgtgtaagagcggcgtatgtgtcaac
aacatccctggctactcctgctactgcaccagtggctactactatgacaacgtgtttctg
gagtgcatcgatgttgatgagtgtgaggcaggggaggacagctgtccagggggaatctgc
gtcaacacattaggctcacacttctgtacctgcgtgcctcctcttgtgttggacgacact
cagcgcagctgtgtcaattccactggcctcgccgtggatgagaagctgtccttctgctgg
cagtatgtcacaccagacctggtgtgtcagagccccctgctgggcggacaggtcaccttc
actgagtgctgctgtctgtatggagagggctggggactgcagtgtgctctgtgtcctgcc
agagactcagaggactatgaggctcggtgtaacatcttcctgaggcccccagagtttcct
ccccccttccctgaccgctacggtccggacccagggccaggtagaggaggaggagggggg
tatcgcgtgccctatggaccggactccttcccagaccccatcccccgcaggcctgagtac
ccccggcctgactatgacgactacacaccaccagggggcagcaggtctggcttcagaggc
agaacacccagcaccttcagggtcccagagagcccatacagacagccctcaggatacatt
cctgagcggtactatgacgaggacgactacggcccgcctgacgctcctccgagacctccc
ttccgcaccctcccagaccctcgttctgagctctcctttggggcgcggccccctctcccc
atccccgagggcctccctctgagtctggcccccctcccggacagtgacccctacagtgag
gaggaggaggaggaggggccagaaccctggcgtgtgggaccccctttccctgacagacgg
gggccaggcggaggcccaaggagagtctatgagagacaatatgagccgtatgcaggcctg
agcacagaggactgtgggatactgcacggttgtgagaacggcaggtgtatccgtgtggcg
gagggatacacgtgtgactgctacgagggatacgagctggacatgacctccatggcctgc
atagacatcaatgaatgtgaggatcctgacagcgtatgtgcgagcggccgatgcatcaac
acagacggctcctatcgctgtgtgtgtcaccggggctacgtcatgtcccgccggcccaac
cactgtgtggcagcataa
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