Oncorhynchus tshawytscha (Chinook salmon): 112266879
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Entry
112266879 CDS
T05605
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
otw04140
Autophagy - animal
otw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112266879
04137 Mitophagy - animal
112266879
04148 Efferocytosis
112266879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112266879
Transcription factors [BR:
otw03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
112266879
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Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
112266879
NCBI-ProteinID:
XP_042153179
UniProt:
A0AAZ3SGP2
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Position
LG14:26602905..26620583
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AA seq
630 aa
AA seq
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MDTKEEPVAQRSGTDQRKVRSRDAARCRRSQETELFYELAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSAGDTSEERVTDGDEDTMDGFYPRALAGFIMVMTEEGDMIYLGDSVDK
HLGIQQLELLGQSVYDFVHPCDQEELRDLLVPRPGVFKKKPVQQHTEITFFLRMKSTLTV
RGRTVNIKSATWKVLHCTGHMRVCSSDEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTF
LTRHSMDLRFTHCEGRVAELVGYEPEDLIGKSAYEFHHALDSDHVTKSLHILLSKGQVCT
SQYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLK
SDPVSEASEETLCDSDNSSSGELFQQLKENPEDLLQLAPVSGDPIVPLTDFAELSFSLPS
SPDSAPVFPQDLCTPELWTLLSPIFDKPTSSSPTPALIPIEELPIEDEAEKLLAVCPEEV
VQKEDQPEDVEVVDLDMLAPYISMDDDFLLSVQLPGIPDSPSPEPPTATRKRSHEQDEDM
PSQLMSQDKRLRQSVSPIEQELLLSYTLLDCLEDTDSPELELGPHPHKRSQLLTDRDPIL
GEAQGRCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaggaagagcctgttgcacaacggtcgggtacggatcagcggaaggtgcgt
tcccgggatgcggcacgctgccggcggagtcaggagacggagctgttctacgagctggcc
cacaccctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttccttcgcatgcaccacctccgctcagcaggggacacgagtgaggag
cgcgtcacagatggggacgaggacacgatggatgggttctacccccgggcactggcaggc
ttcatcatggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcgacaaa
cacctgggcatccaacagctggagctgctgggccagagtgtttatgactttgtccaccca
tgtgaccaagaggagctacgggatctcctggtgcctaggccaggtgtattcaagaagaaa
ccagtgcagcaacacacagagattaccttctttcttaggatgaagagcactctgactgtt
agagggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccac
atgcgtgtgtgctccagtgacgaggactcgtcaccccctgcaggcagcttcatgacggtg
ctgtgtgagcccatcccccacccgtctagtgtggagttccctctggaccgcagtaccttc
ctcactcgacacagcatggacctgcgcttcacacactgcgagggcagggtggcagagcta
gtgggatacgagccagaagatctgattggcaaatctgcctacgaattccatcatgccctg
gactcggatcatgtgaccaagagcctgcacatccttctatctaaaggccaggtgtgcacc
agccaataccgtttcctggctaagagtgggggcttcgtgtgggcagagacccaggctaca
gtcatctacaataacaagacctctcaaccagaggctgtggtctgtcttaactttatcctc
agtgtggtggagcaggcagatgtggtgttctcagtagagcagactggctgtgggctgaag
agtgatcctgtctctgaggcctcagaggagactttgtgtgacagtgacaacagcagcagt
ggagagctcttccaacagctgaaggagaacccagaggacctcctccaactggcccctgtc
tccggagaccccatcgtacccctcacagactttgcggagctgtcgttcagccttccatca
agccctgactccgccccagttttcccacaggacctgtgcacccccgagctgtggacgctc
ctctcacccatattcgacaagcccacctcatcatcaccaacaccagcactgatccccatt
gaggagctgccaatagaggatgaggcggagaagttgcttgccgtctgtccagaagaggtc
gtgcagaaggaagaccagcctgaggacgtggaagtggttgatctggacatgctggcaccg
tatatctccatggatgatgatttcctgctcagcgtccagctccctgggatccctgacagc
ccgtccccagaaccccccactgctaccaggaaacggagccatgagcaggatgaagacatg
ccctcccagctgatgagtcaggacaagagactgagacagtctgtgtcccccatcgagcag
gaactgcttctcagctacaccctactggactgcctggaggatacagacagcccagagttg
gagctggggccacacccccacaagcggagtcaactgctgacggacagagaccccatcctc
ggggaagcccagggacgatgtgacaccgcagccttgatgagggacctcttcttgtcccgc
ccacctgaccccctgacctcctctctgacttga
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