Oncorhynchus tshawytscha (Chinook salmon): 112266907
Help
Entry
112266907 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112266907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112266907
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112266907
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
HECT type E3
112266907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
112266907
NCBI-ProteinID:
XP_024300587
LinkDB
All DBs
Position
LG14:27244973..27295182
Genome browser
AA seq
2065 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQVKHKTNSPPESRRPKSKASKAA
PSSASGQSRGHGSRSSSLSLSVASFVLQDDPDAAGTSEREPTGHQSKSEGTTRGLKRSST
PDLNNTYTPTPAKKSKSHPPPRDHTTESKKGPAKSSKKRPLAPELPTPTGRGQSSKSGAS
GASPTQKRKKADSLPGLSSTAGSLPNRTDGRSAKPTKLASKSAASAKAGCSTVTDSSSSA
STSSSSSTGPNSATSTQGARLKQGKDQNKARRSRSASSPSPRRSTRDREQAKAAVSSKFE
WASRFSPKVNLPKPKLSLPGSSKPETSSKPGPSGLQAKLASLRKSTKKRSESPPAELPSF
RRSTRQKTTGSCASTSLCSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARTDEAP
QGASGTASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHR
TIGSGASSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITL
LQMEHNFDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEM
LSRRHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLT
QRLTHQDKKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVTPPVLSSGMF
IMVVRMFSLMCSNCPCLAVQLMKQNIAETLRFLLCGAANGSCQEQIDLVPRSPQELYELT
SLICELMPCLPREGIFAVDLMLKKGSAQATEGAIWQWRDDRGLWHPYNRIDSRIIETAHQ
NGEDEISLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPTTGGHQEVRREDARA
QLMKEDPELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNH
AVSSHIASMLSSQDLKIVVGSLQMAEILMQKLPDVFSVFFRREGVMHQVKNLAESEAFLT
SPPKACTSGTASLCTTTISTATTTAASNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKR
KRLPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGAQTNSTNS
EPSRTAGVSGMARAPPKDSVSNNRDKIKAWIKEQACKFVARYFNTEKIDGSNPALNVLQR
LCTATEQLSLQMDGGVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSSSDRDLVSR
DVRLKRFLHVFYGCPIPGMEPAGRLEPSENGPLLSLVHKMNNCLSQMEQFPVKVHDFPSG
NGNGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGY
GRIREEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQFS
LQSEEERESTDDEANPLGRAGIWTKTHTIWYKPVRDDEDGTKDAVGGKRGRAQTAPTKTS
PRNAKKQDELWHDGVCPSVASPLEMYLMSEPPESITFDDPSLDVNLLLRVLHSISSYWFY
LYDNAVSKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTR
QMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQ
DLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGT
KYMFSSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWML
RHETSISSHDLVNIDPGVAKSIQHLEDIIRQKKRLEQDLSQTRETLQQALESLNMNGCSV
EDLGLDFTLPGFPNIELKKGGKDVPVTIYNLEEYLRLVVYWTMNEGVSRQFESFREGFES
VFPLHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVGFLFDVLSSFD
AEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPD
YSSIEIMRKKLLIAAREGQQSFHLS
NT seq
6198 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccatacagtcgcgggaaggttgcagtcagagcaggtaaaa
cataaaacaaattcccctcctgaaagtagaagacctaaatctaaggcttccaaagccgca
cccagctcagcctctggccagtccagggggcacggctcaagaagtagcagtctgtcactg
tctgtggcttcatttgtgctgcaagacgacccagacgccgcagggacatccgagcgagag
ccaacaggccaccaatccaagagtgaaggcaccacccgagggttgaagagaagttctaca
cctgatctcaacaacacctacacccccaccccagccaagaagtccaaatcccaccctcca
cccagagaccataccactgagtccaagaaaggccctgccaagtcctccaagaagagaccc
ctggctccagagctgcccacgcccacaggccgcggccagagcagcaagagcggggcctct
ggggcctcaccaacccagaaacggaagaaggctgactccctccccggtctgagcagcact
gctgggtccctccccaaccgtaccgacggcagatctgcaaaacccaccaagctggcgtcg
aaatcggccgcctcagccaaagctgggtgtagcaccgtgactgactcctcctcttctgcc
tccacctcttcttcctcctccaccggcccaaacagtgccacttccacgcagggcgccagg
ctcaagcagggcaaagaccagaacaaggcacgtcgctcccgctccgcctccagcccttcc
ccacgccgaagcacccgcgacagggagcaggccaaagctgcagtctcgtccaagtttgag
tgggcctcccgcttcagtcccaaagtcaatctgccaaagcccaaattgtccctacctggc
tcctccaagcccgagacctcctccaaacctgggccctcaggactacaagccaaactagca
agtttgaggaagtccactaagaagcgcagcgagtctcctccagcagagctccccagcttt
cggcggagcacacgtcagaagaccacgggctcctgcgccagcaccagtctgtgcagtcgg
cgaggctcaggcctgggcaagcgcggggcagccgacgctcgccgacaagagaagatggcc
gactcggacaacaaccaggacggggccaactcctcggccgcccgcactgacgaggccccg
cagggggcttcaggtacagcttctagctcagtggctggagctgtagggatgaccacatcc
ggtgagagtgagtccgatgactctgaaatgggcagactccaagccctgttggaggccagg
ggtctacccccacacctctttgggcccctgggaccccgtatgtcccagctgtttcacaga
accataggcagtggagccagctccaaagctcagcagctgctgcagggcctgcaggccacc
ggtgacgagtcccagcagctccaggccgccatcgagatgtgccagctgctggtgatgggc
aacgaggagacgctaggaggcttccctgtgaagagcgtggtgcccgctctgatcacattg
ttgcagatggagcataattttgacattatgaaccacgcctcccgtgctctcacttacatg
atggaggcgctgcctcggtcctctgctgtggtcgtggacgccatccctgtcttcctggaa
aagcttcaggtgatccaattcattgatgtggcggagcaggccctgactgccttggagatg
ttgtcaaggcgtcacagcaaagccatcctgcaggctggtggcctggctgactgtctgctg
tacctggagttctttagcatcaacgcccagaggaacgccctggccattgccgccaactgc
tgccagagcatcacccctgacgagttccactttgtctctgactctctgccactgctgacc
cagagactcacacaccaggataagaaatcggtcgaaagcacttgcctctgttttgccaga
ctggtggataactttcaacacgaggagaacctgctgcagcaggtggcctcgcgggacctg
ctgaccaacatccaacagctgctggtggtcaccccgcctgtgctcagctcgggcatgttc
atcatggtggtgcgcatgttctccctcatgtgctccaactgcccctgtctggccgtgcag
ctcatgaagcagaatattgcagagactctgcgcttccttctgtgcggcgcggccaacggt
agctgtcaggagcagattgacctggtgccccggagcccacaggagctctatgaactcacc
tcactcatctgcgagctgatgccctgccttcctagagagggcatctttgctgtggacctc
atgctgaagaagggcagtgcccaggccacagagggggccatctggcagtggagggacgac
cggggcctgtggcacccctacaaccgcatcgacagtcgcatcattgagacggcccaccag
aacggagaggacgagatcagcctgtccaccctgggccgcgtctacactattgacttcaac
tctatgcagcagataaacgaggacactggcacagcacggggtatccagaggaaacccaac
cccttagccaaccccactactgggggtcaccaggaggtgagacgggaggatgcacgggcc
cagctgatgaaggaggaccctgagctggccaagtgcttcatcaagaccctgttcggggtg
ctgtacgaggtgtacagctcgtcggccggcccagccgtcagacataagtgcctccgagcc
atcctcaggatcatcttcttcgccgatgcagagctcctcaaggacgtgctgagaaaccac
gctgtgtccagtcacattgcctccatgctgtccagccaagacctgaagattgtagttggc
tctctgcagatggccgagatcctcatgcagaagctgcccgacgtattcagtgtcttcttc
agaagagaaggtgttatgcaccaggtgaagaacctggctgagtcagaggccttccttacc
agtcccccaaaggcgtgcaccagcggcacagctagcctgtgtaccaccaccatcagcact
gcgaccactacggcggcctccaacgccaccccagacctgggctcgcctagcttccagcac
agcatggacgactcactagacctcagtccacaggggcggttaagtgatgtgctgaagaga
aaacgtctgcctaagagagggcccagaaggcccaagtactctcctcccagggatgacgac
aaagtagacaatcaggccaagagtcctaccactactcaatcccccaaatcctccttcttg
gccagtctgaaccccaagacctggggcaagctgggcgcccagaccaacagcaccaactct
gagccctctcgcacggccggggtgagcggcatggcacgcgcccctcccaaggactcagtc
tccaacaacagggacaagatcaaggcttggataaaagagcaggcctgtaagtttgtggcc
cgctacttcaacactgaaaaaattgatggaagcaaccccgcactgaatgtactccagaga
ctctgcaccgccacggaacagctcagcctgcagatggatggtggtgtggagtgcctcgtg
gagatctgcagcatcgtgtcagagtcggacgtgtcgtctttcgagatccagcatagcggc
ctggtcaagcagctgctgctctacctgacctccagcagtgaccgtgacctggtcagccgt
gacgttcgcctcaagaggttcctgcacgtcttctacggctgcccgatcccggggatggag
ccggcaggccgcctggagccgtctgagaacggacccctgctgtcactggtgcacaagatg
aacaactgcctaagccagatggagcagtttcctgtcaaggtgcacgacttccccagtggc
aacggcaatgggagcagagggtctcaggccctgaagttcttcaacacacaccaactcaag
tgtcagctgcagaggcacccggactgtaccaatgtgaagcagtggaaggggggcccggtg
aagattgatcccctggccttggtacaggcaattgaacgttacctggttgtccgaggttac
ggacgaatcagagaggaggatgaggacagtgacgatgatggttcagacgatgaaattgac
gaatcgctggcggcccagttcctgaactctggcagtgtgcgccaccggctacaattctac
atcggcgaccacctgctgccttacaacatgacggtgtaccaggcagtgcggcagttcagc
ctgcagtctgaggaggagagagagtccacggacgacgaggccaacccgctcgggcgggct
ggcatctggaccaaaacccacaccatatggtataagccagtgagggatgatgaggatggt
actaaggatgcggtgggaggtaagaggggccgggcacagaccgcccccaccaagacctca
ccccgcaacgctaagaaacaggacgagctgtggcacgacggcgtgtgtcccagcgtggcc
agccccttggagatgtacctcatgtcggagcccccggagagcatcaccttcgacgacccg
tctctggacgtcaacctgctgctgagggtgctgcactccattagtagttactggttctac
ctgtacgacaatgctgtgtctaaggagatcatccccaccagtgagttcatcaacagtaag
ctgacagccaaggccaaccgacagctgcaggaccctctggtcatcatgaccggcaacatc
cccacctggctcacagagcttgggaagacctgtcccttcttcttcccgttcgacacacgg
cagatgctcttctatgtaacagcgtttgaccgtgaccgggccatgcagcgcctcctcgac
accaaccccgagatcaaccaatcagattctcaggacagccgcgtggcgccccgccttgac
aggaaaaagcgaacgataaaccgtgaggagctgctgaagcaggcggagtcagtgatgcag
gacctcggcagctccagagccatgctggagatccagtatgagaacgaggtgggcacaggg
ctgggtcccaccctggagttctacgccctggtctcccaggagctgcagagggccgacctt
gggctgtggaggggtgaggaggtcaccctgtccaaccccaaaggaagccaagaagggacc
aagtacatgttcagctcccgagggctgtttgccgttcccttcggcaggacaaccaaaccg
gcgcacatcgccaaaatcaagatgaagttccgcttcctgggcaagctgatggccaaggcc
ataatggacttcagactgctggacctgcccctggggctgcccttctacaagtggatgctg
cggcacgagacatccatcagctcccacgacctggtcaacatcgacccgggcgtggccaag
tccatccagcacctggaggatatcatccgccagaagaagaggctggagcaggacctctcc
cagacaagggagaccctgcagcaagctctggagagtctcaacatgaacggctgctctgtg
gaggacctgggcctggacttcaccctgcctggtttccccaacattgagctgaagaagggg
ggcaaggatgtccctgtcaccatctacaacctggaggagtacctcaggctggtggtctac
tggacgatgaacgaaggcgtgtcccggcagtttgagtctttcagggaagggttcgagtcg
gtcttccccctgcatcacttgcagtatttctaccctgaagagttggatcagctgctttgt
ggcagcaagtccgagacctgggacgtcaagaccctgatggagtgctgtcgtcccgaccac
ggctacacgcatgacagtcgtgctgttgggttcctgtttgatgtgctcagtagttttgac
gcagagcagcagagactcttcctgcagtttgtcacaggaagccccaggctgcctgttgga
ggtttccgtagtctgaacccgccgctgaccattgtgcggaagacttttgagtcaacagag
aacccggacgacttcctgccctcggtaatgacctgcgtcaactacctgaagctgcccgac
tactccagcatcgagatcatgcgcaagaaactgttgattgcggcccgagagggccagcag
tccttccacctgtcctga
DBGET
integrated database retrieval system
