Oncorhynchus tshawytscha (Chinook salmon): 112266956
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Entry
112266956 CDS
T05605
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
112266956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112266956
Membrane trafficking [BR:
otw04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
112266956
Protein recycling
Other Rab GTPase associated proteins
112266956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Rep_N
Motif
Other DBs
NCBI-GeneID:
112266956
NCBI-ProteinID:
XP_024300695
LinkDB
All DBs
Position
LG14:complement(29679107..29688309)
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AA seq
504 aa
AA seq
DB search
MSHRSERRGIHVDQSELLCTKGCGFYGNTAWQGLCSKCWREEYQQTRHKQIQEDHALAER
LQKEEEAAYANNHQGAAQPQPAIAPFSKFEERKTKEKSRKVNTMTKFFTPSTKTPPKKES
VPGEVLSTPSPSVSRKPLETDRTTREFIDFLKTLKPGREIFKQCRAFTESMAYKRDLGAD
ELSECVQDFYQNLSDRLHTHFKGSSERVESVMDEVERYMMTRLYEEVFCPETTDDEKKDL
AIQKRISGWGWLGCRALHWVTIEMLCVPVDEEIPEVSDNVVKAITDVIEMDSKRVPRDKL
TCITRCSKHIFNAINTTKKEAASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLM
SGEDGYYFTNLCCAVAFIEKLDGQSLNLSVEEFELYMSGQASPQRPQAATSPACSAAFSQ
MNESLDLLTGLGVRQERVMEGARRLESDLIDWRDGVEHKVQDVMERFPLEMHPTAPPTTS
SAIDADNVENDHLPSPLQPQLFAG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagccaccggtcggaacgtcgtgggatccatgtggaccagtcagagctgctgtgtacg
aagggatgtggtttctatggcaacacagcctggcagggcctctgctccaagtgctggcgg
gaggagtaccaacaaaccagacacaaacagatccaggaggaccatgcactggcagagagg
ttacagaaggaggaggaggcagcgtacgctaacaaccaccagggggcagcccagccccag
cctgccatcgcacccttcagcaagtttgaagagaggaaaaccaaggagaagtcacgtaaa
gtcaacacaatgactaagtttttcactccctcaacaaagacaccgcccaagaaagaatcc
gtccctggcgaggtcctgtcgacccccagcccctcagtgagccgcaagcccttagagacg
gaccgcaccacacgagagttcatcgacttcctcaagacactgaaacctggcagggagatc
ttcaaacagtgccgagccttcacagagagcatggcctacaagagggacctgggtgctgat
gagctgtctgagtgcgttcaagacttctaccagaacctttcagaccgcctgcacacacac
ttcaaagggtcgtcggagcgcgtagagagtgtgatggacgaggtagagaggtacatgatg
acacgtctctacgaggaagtcttctgtcctgagaccacagatgatgagaagaaagacctg
gccattcaaaagagaatcagtggatgggggtggctgggttgcagggccttgcattgggtc
accattgagatgctgtgtgtccctgtggatgaggagattccagaggtgtctgataacgtg
gtcaaagccatcacagacgtgatcgagatggactcgaagcgtgtgcccagggacaagctg
acctgcatcacacgctgcagtaagcacatcttcaatgccatcaataccaccaagaaggag
gcggcatctgctgatgacttcctgcccaccctcatctacatcgtcctgaaggccaaccct
ccgcgactgcagtccaacatccagtacatcacccgcttctgtaaccctagccgcctcatg
agcggagaagacggatactacttcaccaacctgtgctgtgcggtggccttcatagagaag
ctggatggccagtctctgaacctgagcgttgaggagtttgagctctacatgtcaggccag
gcgtctccccagcgtccccaggctgccacctcccccgcctgtagtgctgctttcagccag
atgaacgagagtctggacctattgacgggactgggcgtgaggcaggaacgcgtcatggag
ggggctcgccgcctggagagtgacctcatcgactggagggatggggtagagcacaaagtg
caggatgtgatggagaggttccccctggaaatgcaccccaccgctccccccaccacctct
tctgccatagatgctgacaacgtggaaaacgaccacctaccttctcctctccaaccccag
ttgtttgccggctga
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