Oncorhynchus tshawytscha (Chinook salmon): 112267008
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Entry
112267008 CDS
T05605
Name
(RefSeq) tripartite motif-containing protein 3
KO
K11997
tripartite motif-containing protein 2/3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112267008
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112267008
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
DUF4934
DUF5128
Filamin
SGL
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
TEN_NHL
zf-RING_2
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
Invasin_D3
Mala_s_1-like
zf-ANAPC11
Prok-RING_4
Med9
HH_AprE
YtkA
TolA_bind_tri
Baculo_PEP_C
Motif
Other DBs
NCBI-GeneID:
112267008
NCBI-ProteinID:
XP_042153282
UniProt:
A0A8C8CW74
LinkDB
All DBs
Position
LG14:complement(31096792..31141197)
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AA seq
772 aa
AA seq
DB search
MSVAMAKRETGSTSPVVRQIDKQFLVCSICLDHYHNPKVLPCLHTFCEKCLQNYIPPQSL
TLSCPVCRQTSILPEKGVAALQNNFFITNLMEVLQRDPECSPPEACSVLESVSAAAACQP
LSCPNHEGKVMEFYCESCETAMCLECTEGEHREHVTVPLRDVLEQQKAALKTQLDAIRNR
LPQLRAAIELVGEISKQLTDRKNEAVTEISSTFEELERALHLRKTTLITDLENICCTKQK
VLQAQLSSLLQGKDNIQSCSSFTEQALSHGSATEVLLVQKQMGERVSALARHTYPEQPHE
NGHLDCQVETEGLRRSIQNLGVLITTGAIGHTSVATGEGLRHTLVGQHTTVTVTTKDKDS
ELVKTGNAALRAEIMSVDGAVTTETEVVDNKNGTYEVGYTMRSEGEFSFSLLLYDQPVRG
SPFRLRAVKPSDVLQSPDDVKRRVKSPSGTGGHIRQKAVRRPSSMYSTTKKKENPIEDEL
IYRVGTRGRDKAEFTNLQGISTSSNGRIVVADSNNQCIQVFSNDGAFKLRFGVRGRSPGQ
LQRPTGVTVDMNGDIIVADYDNRWVSIFSSDGKFKSKIGAGRLMGPKGVAVDRNGHIITV
DNKACCVFIFQANGKLVTKFGARGTSDRQFTEKSGTNISLEPKLSKSGPAFSPHFVAINN
KNEIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDANGNIIVADWGNSR
IQVFDSSGSFLSYINTTADPLYGPQGLSLTSDGHVAVADSGNHCFKVYRYLQ
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcgccatggcgaagcgtgagacgggcagcaccagcccagtggtccggcagata
gacaaacagttcctggtctgcagcatctgtctggaccactaccacaaccctaaagtcctg
ccctgcctacacaccttctgtgagaaatgcctacagaactacatcccccctcagtccctg
acactatcgtgtcccgtgtgtcgtcagacgtccatcctgccagagaagggcgtggccgcg
ctgcagaacaacttcttcataaccaacctgatggaggtgctgcagagggacccagagtgt
tctcctccagaggcctgcagtgtgctggagtcagtcagtgcagctgccgcctgccagcca
ctctcctgccccaaccacgagggcaaggtgatggagttctactgcgagtcgtgtgagact
gccatgtgtttggagtgtactgagggagagcacagggaacatgtgactgtccctctgaga
gatgtcttggagcaacagaaagcagccttgaagacccagctggatgccatacgcaacagg
ctgccccagctgagggctgctatagagctggtaggggagatctccaagcagctgactgac
aggaagaacgaggcggtgacagagatcagcagtacctttgaggagctagagagggcgcta
cacctcaggaagaccaccctcatcactgacctggagaacatctgctgcaccaagcagaag
gtgctccaggcccagctctcttctctcctgcagggtaaggacaacatccagagctgcagt
agttttacggagcaggctctgagccatggcagtgctacagaggttctgctggtccagaaa
cagatgggggagagggtcagcgccctggcccgacacacctacccagaacagccccatgag
aatggccatcttgactgccaggtggagacagagggtcttcgtcgttctatccagaaccta
ggcgtgctcatcaccacgggagccattggccacacctccgtcgccacgggagagggacta
cgccacacactggttggccagcacaccactgtcacagtgacgaccaaggacaaggacagc
gagctggtaaagacaggcaacgcggcgctgcgggctgagattatgtcggtggacggggcg
gtaaccacggagacggaggtggtggataataagaatgggacgtatgaggtgggctatacc
atgcgctctgagggggagttctccttctctctcctcctgtacgaccagccggtccggggc
agtccgttccggctgcgtgcggtcaagccctcggacgtcctgcagtctccagacgatgtg
aagaggagggtgaagagtcctagtgggacggggggccacatcagacagaaggctgtgagg
agaccctccagtatgtacagcaccaccaagaagaaggagaaccccatcgaggatgaactc
atctacagagtcggaactagagggagagataaagcagagtttacaaacctccagggaatc
tccacctccagcaacggacgtatcgtagtggctgacagcaacaaccagtgtatacaggtg
ttctccaacgatggggcattcaagctgaggtttggggtcaggggtcggtcgccggggcaa
ctgcagcgccccacgggggtcaccgtggatatgaacggtgacatcattgtggccgactac
gacaaccgctgggtcagcatcttctcctccgacgggaagttcaagagtaagatcggggcg
ggtcgtctgatgggccctaaaggagtggcagtggacaggaacggacacatcatcaccgtg
gataacaaggcctgctgtgtgttcatcttccaggccaatgggaagctggtcaccaagttt
ggagccagggggacatcagacagacagttcacagaaaaaagtggtacaaacatttcactg
gaacccaagctgagtaaatctggccctgcgttcagtccccactttgtggcgatcaacaac
aaaaatgagattgtggtaacagacttccacaaccattcagtgaaggtgtacagtgcagac
ggggagttcctgtttaagtttggttcccatggcgaggggaacggacagttcaatgccccg
acaggcgttgccgtggacgccaacgggaacatcatcgttgccgactgggggaacagcaga
atacaggtgtttgatagttccgggtcgttcctgtcctacatcaacaccacagcagaccct
ctctatggtccacagggcctgtctctcacctctgatggacacgtggctgtggctgactct
ggcaaccactgcttcaaggtttaccgctacctgcagtag
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