Oncorhynchus tshawytscha (Chinook salmon): 112267011
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Entry
112267011 CDS
T05605
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112267011 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112267011 (prpf8)
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112267011 (prpf8)
Complex C
U5 SnRNP specific factors
112267011 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
112267011
NCBI-ProteinID:
XP_024300773
LinkDB
All DBs
Position
LG14:32061961..32084920
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGIHPPAQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDAEEDSSVAEWLYEHQPLKDTNKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcattcccttatcgaggggtacctggtggaatgcccccaggtatccaccct
ccagcccaggttccagattacatgtctgaggaaaaactgcaagagaaagccagaaaatgg
cagcagttgcaggcgaagcgctactctgagaagaggaagtttgggtttgttgacgcccag
aaggaagacatgccacctgagcatgtccgtaagatcatcagggaccacggtgacatgacc
aacaggaagttccgtcacgacaagagggtctacctgggagccctgaagtacatgccccac
gcggtgctgaagctactggagaacatgcccatgccttgggagcagatcagagacgtgcct
gttctataccacatcaccggagccatttcctttgtcaacgagatcccctgggtcatagag
cctgtctacatcgcccagtggggcgccatgtggatcatgatgcgccgtgagaaaagggac
cgtcgtcacttcaagcgtatgcgtttccctccctttgatgacgaggaacctccgctggac
tacgctgataacatcctggatgtggagccgctggaggccatccagatggagctggatgca
gaagaggactcctctgtggcggagtggctctacgagcaccagccccttaaggacaccaac
aagtatgtgaacgggaccacgtacaggcgttggcagttcaccctgcccatgatgtccacg
ctgtaccgtctggccaaccagctgctgactgaccttgtggactacaactatttctacctg
tttgacctgaaggccttcttcacctccaaggccctcaacatggccatccctgggggaccc
aagtttgaacccctagttagggacatcaacctccaagatgaagactggaacgagttcaac
gacatcaacaagattatcatcagacagccaatcaggacggagtacaagattgccttccca
tacctgtacaacaaccttccccaccacgttcaccttacctggtaccacactcccaacgtg
gttttcatcaagactgaggatcctgatttgccagcgttctactttgaccccctgatcaac
cccatctcccacagacactcggtcaagagtcaggagcctctgccagatgatgatgaggag
tttgagcttccagagtacgtggagcccttcctgaaggagacgcccctctacacagacaac
acagccaatggaatcgctctgctctgggctccacgccccttcaatctgcgatctgggagg
accaggcgggccatcgacatcccactcatcaagaactggtatcgtgagcactgcccggcc
ggccagccagtgaaagtgcgtgtgtcttaccagaaactgctcaagtactacgtactcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtacttgttccgttccttcaaa
gccaccaagttcttccagtcgactaagctggactgggtggaggtgggcctgcaggtgtgc
agacagggatacaacatgctgaacctgctcatccaccgcaagaacctcaactacctgcac
ctggattacaacttcaacctcaagcctgtcaagaccctcaccacaaaggaacgtaagaag
tccaggttcgggaatgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccacgtacagtacagactgggcaacgtggatgctttccagttggcagacggg
ctgcagtacatctttgcccacgtgggccagctgactggcatgtaccgctacaagtacaag
ctgatgagacagatccgcatgtgcaaggacctcaagcacctcatctactaccgcttcaat
actggtccggtgggtaagggtcctggctgtgggttctgggccccaggatggagggtatgg
ctgttcttcatgaggggcatcacccccctgctagagagatggctcggcaacctgctggcc
aggcagttcgaaggtcgtcactccaagggcgtggcgaagactgtgacgaagcagcgcgtg
gagtcccactttgacctagaactgcgtgcggccgtgatgcacgacatcctggacatgatg
cctgagggcatcaagcagaacaaggccagaaccatcctgcagcacctctctgagtcgtgg
cgctgctggaaggccaacattccctggaaggtcccaggcctgcccacccccatcgagaac
atgatcctacggtacgtgaaggccaaagctgattggtggaccaacacggcccactataac
cgcgagcgaatcaggcgcggcgccaccgtggacaaaacggtgtgcaagaagaacctgggc
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggtccatacatcacagcagaggaggctgtggccatctacaccaccacagtccactggctg
gagagcagacgcttctcccccatccccttccccccgctgtcctacaaacacgacaccaag
ctgctcatcctggccctggagaggctcaaagaggcctacagtgtgaagtccaggctgaac
cagtcccagagagaggagttggggctgatagaacaggcttatgacaaccctcacgaggcc
ctgtccagaatcaaacgtcacctgctcacacagagagccttcaaggaggtgggcatagag
ttcatggacctgtacagccacttggtgcctgtgtatgacgtggagcccctggagaagatc
acagatgcctacctggaccagtacctgtggtatgaggctgacaaacgacgtctcttcccc
ccctggatcaaaccagctgacacagagcctcctccactccttgtctacaagtggtgccaa
ggcatcaacaacctgcaggatgtgtgggagacgatggagggagagtgtaacgtgatgctg
gagtctcgctatgagaagatgtatgagaaaatagatctgacgctgctcaacagactgctg
cgtctcatcgtggaccacaacatcgctgactacatgaccgccaagaacaacgtggtcatc
aactacaaggacatgaaccacaccaactcgtacggtatcatccgtggtctgcagtttgcc
tcgttcatcgtgcagtactacggcctcgtcatggacctgttggtgctgggcctccaccgg
gccagtgagatggccggaccccctcagatgcccaacgacttcctgtctttccaagatacg
gccacagagagcgcccaccccatccgcctctactgcagatacatcgaccgcatacacata
tttttcaggttctcagctgatgaggccagggacctgatccagaggtacctgacggagcac
cctgaccccaacaatgagaacattgtgggctacaacaacaagaagtgctggcccagagac
gccaggatgagactgatgaagcacgacgtcaacctgggtcgtgctgtgttctgggacatt
aagaaccgcctgcctcgctctgtgaccacggtccaatgggagaacagctttgtgtccgtc
tacagcaaagacaaccctaacctgctcttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgtcgcaccagctacgaggagttcacccacaaggacggcgtctggaacctgcag
aacgaggtgaccaaagagcgtacggcccagtgtttcctgcgtgtggatgatgagtccatg
cagcggttccacaacagagtccgacagatactcatggcctcaggatccaccaccttcacc
aagattgtgaacaagtggaacacggctctgatcggtctgatgacgtacttccgcgaggcg
gtggtcaacacccaggagctgctggacctgctggtgaagtgtgagaacaagatccagacc
cgtatcaagattggcctcaactccaagatgcccagtcgcttcccccctgtcgttttctac
acccccaaggagctgggagggctgggcatgttgtccatgggacacgtcctcatcccacag
tcggatctgaggtggtcgaagcagactgacgttggcatcacccatttccggtccggtatg
agccacgaggaggaccagctgattcctaacctgtaccgttacatccagccctgggagagt
gagttcattgactcccagagagtctgggcagagtacgccctgaagagacaggaggctatc
gcacagaacaggcgtctgaccctggaggacttggaggactcttgggacagaggtatcccc
cgtatcaacaccctgttccagaaggacagacacacgctggcctacgacaagggctggagg
gtccgcactgacttcaaacagtaccaggttctgaagcagaacccgttctggtggacccac
cagcggcacgacgggaagttgtggaacctcaacaactacaggacagacatgatccaggct
ctgggaggggtggagggcatcctggaacacacgctcttcaaagggacctacttccccacc
tgggagggtctcttctgggagaaggccagtggctttgaggagtccatgaaatggaagaag
ctgaccaacgcccagagatctggtctgaaccagatccccaaccgtcgcttcaccctctgg
tggtctcccaccatcaacagggccaacgtgtacgtgggtttccaggtgcagctggatctg
accgggatctttatgcacggaaagatccccaccctgaagatctccctcatccagatcttc
agggctcacttgtggcagaagatccacgagagcgtcgtcatggatctctgtcaggtgttt
gaccaggagctggatgccctggagattgagacagtgcagaaggaaaccattcaccccagg
aagtcctacaagatgaactcctcctgtgccgacatactactcttcgcctcctacaagtgg
aacgtctcacgcccctcgctgctcgctgactcaaaggacgtgatggacagcaccaccacc
cagaagtactggatcgacatacagcttcgctggggagactacgactctcacgacattgag
cgctacgccagagccaagttcctggactacaccacagacaacatgagcatctacccctcc
cccaccggggtgctcatcgccatcgacctggcctacaacctccacagtgggtacggtaac
tggttcccgggaggcaagcctcttatccagcaggccatggctaagatcatgaaggccaac
cctgccctgtatgtcctgagggagcgcatccgtaagggtctgcagctctactcctcagag
cccactgagccctacctgtcctcccagaactacggagagctcttctccaatcagatcatc
tggtttgtggacgacactaacgtctaccgtgtcaccatccacaagacgtttgaggggaac
ttgaccaccaagcccatcaatggagccatcttcatcttcaaccccaggacaggtcagctc
ttcctcaagatcatccatacctctgtgtgggccggacagaaacgtctgggacagctggct
aagtggaagacagctgaggaggtggctgctcttattcgttccctacctgtggaggagcag
ccaaaacagatcattgtcaccaggaagggcatgctggatccccttgaggtgcacttgctg
gacttccccaacatcgtgatcaagggctctgagctgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctaatcctgaaggccaccgagcctcagatggtcctcttc
aacctgtacgacgactggctcaagaccatctcctcctacaccgcgttctcacgtcttatc
ctgatcctaagagcgctccatgtgaacaacgaccgtgccaaggtgatcctgaagcctgat
aagaccaccatcacagagcctcaccacatctggcccacactgaccgatgaggagtggatc
aaggtggaggtgcagcttaaagacctcatcctggccgactatggaaagaagaacaacgtc
aacgtggcgtctctgacccagtctgagatccgtgacatcatcctgggcatggagatctct
gctccgtcccagcagcgccagcagatcgctgagatcgagaagcagaccaaggagcagtcc
cagctcaccgccacgcagacacgcacagtcaataaacatggagacgagatcatcacctca
acaacctccaactacgagacacagaccttctcctccaagacagaatggagagtcagggcc
atctctgctgccaacctgcacctgaggaccaaccacatctacgtgtcgtctgatgacatc
aaggagacaggctacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagacctgcgagcccagattgcaggttacctgtacggcaccagtccccctgacaacccc
caagtgaaggagatcaggtgtatcgtcatggtaccccagtggggaactcatcagaccgtc
cacctacccaatcagctgcctggtcacgagtacctcaaggagatggagccgctgggttgg
atccacacccagcccaacgagtctccccagctctccccccaggacgtcaccagccatgcc
aagatcatggctgacaaccccgcctgggacggagagaagaccatcatcatcacctgcagt
ttcactcctggctcatgcacgctgacggcctacaagctgactcccagtgggtacgagtgg
ggcagacagaacacagacaagggcaacaaccccaagggctacctgccctcccactatgag
agggttcagatgcttctgtctgaccgcttcctgggcttcttcatggtgcctggacaggtt
tcctggaactacaacttcatgggtgtccgccacgaccccaacatgaagtatgacctgcag
ctgtccaaccccaaggagttctaccacgaggtccatcgcccctctcacttcctcaacttc
gcctccctgcaggagggagagatctacaacgcagacagagaggacatgtacggttga
DBGET
integrated database retrieval system
