Oncorhynchus tshawytscha (Chinook salmon): 112267040
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Entry
112267040 CDS
T05605
Name
(RefSeq) lissencephaly-1 homolog A
KO
K16794
platelet-activating factor acetylhydrolase IB subunit alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw00565
Ether lipid metabolism
otw01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09100 Metabolism
09103 Lipid metabolism
00565 Ether lipid metabolism
112267040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112267040
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112267040
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
112267040
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112267040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_Nup120_160
Beta-prop_DCAF4
Beta-prop_EML
WDR90_beta-prop_4th
LisH
Beta-prop_SPT8
LisH_PAC1
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
eIF2A
Nucleoporin_N
Beta-prop_WDR35_TULP_N
Beta-prop_NUP159_NUP214
Pox_A_type_inc
Beta-prop_WDR11_2nd
ARMC9_LisH
DUF2570
LisH_2
SutA-RBD
Motif
Other DBs
NCBI-GeneID:
112267040
NCBI-ProteinID:
XP_024300814
UniProt:
A0AAZ3PW90
LinkDB
All DBs
Position
LG14:32686749..32779166
Genome browser
AA seq
410 aa
AA seq
DB search
MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDMNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEITLGGPIAQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF
SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGTLIASCSNDQTVRVWVVASKECKAELREHEHVVECISWAPESAHPTILEATGSE
SKKSGKPGPFLLSGSRDKTIKMWDVSIGMCLMTLVGHDNWVRGMLVHPGGKFILSCADDK
TLRIWDYKNKRCMKTLSAHEHFVTSLDFHKNAPYVVTGSVDQTVKVWECR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgtcacaacggcaacgagacgaactaaatcgagcgatagctgattatcttcgt
tccaatggatatgaagaggcttattcaactttcaagaaggaggcagaattagacatgaat
gaagaattggataagaagtacgctggccttttggaaaagaaatggacctcagtcatcaga
ttacaaaagaaggtgatggagctggagtcaaagctgaacgaggctaaggaggagataacc
ttgggtgggccaatagcccagaagcgtgaccccaaagagtggatacctcgcccgccggag
aagtacgcgctgagcggccatcgttcccccgtcacacgtgtcatctttcacccagtcttc
agtgtcatggtgtctgcctccgaggacgccacaataaaggtgtgggactatgagacagga
gactttgagcggacgctgaagggtcacacagactctgtccaggacatatcctttgaccat
actggcaagctgttggcctcctgctctgcagacatgaccatcaagctgtgggacttccag
ggctttgagtgcatcagaaccatgcatggacacgatcacaatgtttcatctgttgccatc
atgcccaatggagatcacatagtatctgcctcgagggacaaaaccattaaaatgtgggag
gtggccactggctactgtgtgaagacgttcacgggccacagggagtgggtgaggatggtc
cggcccaaccaggatggcaccctgatcgccagctgctccaacgaccagactgtgcgtgtg
tgggtggtggcatccaaagagtgcaaggctgagctgcgggagcacgaacacgtggtggag
tgcatctcctgggctcctgagagtgcccatcccaccatcttggaggccaccggctcagag
tctaagaagagtggtaagccgggccctttcctgctgtctggctccagagacaagaccatc
aagatgtgggacgtcagcattgggatgtgccttatgacactggttggccatgataactgg
gtgcgcgggatgcttgtccaccccggaggcaagttcatattgagctgtgctgacgacaag
accttaaggatctgggactacaagaacaagcgctgcatgaagaccctgagtgcccatgaa
cattttgttacctctctggatttccacaagaatgctccgtacgtcgtcaccggaagcgta
gatcaaacagttaaagtgtgggagtgtcgctga
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