Oncorhynchus tshawytscha (Chinook salmon): 112267080
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Entry
112267080 CDS
T05605
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112267080
03036 Chromosome and associated proteins [BR:
otw03036
]
112267080
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112267080
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
112267080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
HHH_3
Spt6_S1
S1
SPT6_acidic
S1_RRP5
HHH_9
SH2
Tex_N
Tex_YqgF
oligo_HPY
Motif
Other DBs
NCBI-GeneID:
112267080
NCBI-ProteinID:
XP_024300911
LinkDB
All DBs
Position
LG14:34041993..34073222
Genome browser
AA seq
1729 aa
AA seq
DB search
MDFIESEAEESEEEFGSTAYEEEERENTEDQDEDGNLSGLIDDGVDEREGEEEEEKEGKK
DKEGDSDSGEEIGHHKRKRSFDDRLDDDDIDLIEENLGVKVKRQKFRRLRDMSDDEDEEG
DDDVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEQEDDEESDIDDFIVDDDGQPL
KKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEDADEESWDRPKKQTK
KRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTCVKPAEDDELEQEAEWI
YRNAFSTLTISMQENADYLDRGPATTFSRKGPSTIQKIKEALNFMRNQHFEVPFIAFYRK
EYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFEQISADPDKPLADGIR
PLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSKKKLKKIKEVDEDGNE
QEVVEEEEEEEEEHPKGPDLKLASRRDMYSICQGAGLDGLAKKFGLTPEQFGENLRDSYQ
RHETEQFPAEPLELAKDYICSQFSTAEAVLEGTRYMVAMQIAREPLVRHVLRQTFQERAK
INIKPTKKGKKDVDEAHYGFSFKYLKNKPVKELNGDQFLKMLQAEEEGLLTINVCIDLIG
VKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLYPQMAKELKNKLIA
EAKENIIKACSRKLYNWLKVAPYRPDQQVEEEEDEELMSEAQGKGIRVLGVAFSSSRDTP
VFCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLNSKKPHIIAIAGE
NRDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEADFRDYPPLLRQA
VSVARKIQDPLVEYAQVCSSDDDILCLKLHPLQEHVVKEDLLNALYCEFINRVNEVGVDV
NRAMAHPYTQSLLQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMCHMGPKVFINCAG
FIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEIL
ENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTYRGPNTEEIFNLL
TKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVW
NHFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKIDIE
KLSVDLTCRTSDLSDKNNDWKLPKDTYYDFDTETEDVKQEEEAKKKQQRTTYIKRVIAHP
SFHNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADSIYQHIDVREEGKENAFS
LGHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECNGGDRKKMEEVLVKSKKE
KPTFIPYYVSACRELPGKFLLGYQPRAKPRVEFVTVTPEGFRYRGQIFPTVNGLFRWFKD
HFQDPVAGITPSSSSRTRTPASVNATPANINIADLTRAVNALPQNMTSQMFSAIAAVTGQ
GQNPNTTPAGWASSQYGYTGDSSGGGGSSSAYHVFATPAQQPIATPLLTPSYSYTTPTPS
QQQTITTPQYPSSTPQSSHGSQGHGHRPSSSTPTSSSSSRHHRTPTPKATSHTAVDWGKM
AEQWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDATPLLDEMDR
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagcgaagcagaggagtctgaggaggaatttgggagtacagcatat
gaggaggaggaacgggagaataccgaggaccaagatgaggatggaaacctcagtggtctg
attgatgatggtgtggatgaaagggaaggagaggaagaggaggagaaggaagggaagaaa
gataaggaaggagatagtgactctggggaggaaattggacaccataagaggaagagaagc
tttgacgaccgcttggatgatgatgatattgatctcattgaggagaatttgggagtgaaa
gtgaaaaggcaaaagttccgtcgtttgcgagacatgtcggacgatgaggatgaggaggga
gatgatgacgtcagggaggcccatgagaaggacatgatagcggatgagatcttcatgggg
acgggagcggatgagggcgaggcattggatgtgcctttgcatcccggggaggatgagcag
gaggacgatgaagagtctgatatcgatgactttattgtggatgatgacggacagcccttg
aagaaacccaagtggaggaagaagctgccaggatatacagatgcagcacttcaggaggcc
caggagatattcggaggggactttgactttgccgagtttgacactgaagcctatgaagat
gcagaggaggaggaggatgcagatgaagagtcatgggaccggcccaagaagcagaccaag
aagagggtgggccgacgcagtatctttgagatctatgagcccagtgagctggagagcagt
cacatgacggaccaggacaatgagatccgttccactgacatgccagagaggttccagttg
cgctccacttgtgtgaagcctgcagaggatgatgagttggaacaggaggctgagtggatc
tataggaatgccttctctactctcaccatctccatgcaggagaacgcagactatttggac
agaggtccagccactacatttagcagaaaaggccccagcaccatccagaagattaaagag
gctttgaatttcatgagaaaccaacactttgaggttccgttcatagcgttctacaggaaa
gagtatgtggaacctgaactcaatatcaatgatctgtggaaagtttggcagtgggatgag
aagtggacccagttgaaaacccgcaaacagaacctgagacgcctgttccagaagatgcag
ggataccagtttgaacagatctcagcagacccagataagccactggctgatggcattcga
ccattagacacttcagatttagagcggctgaaggatgtccagtctagtgatgaactgggc
gacgtctacaaccatttcctgctgtactatggccgggatatcccaaagatgcagaatgca
gccaggtccagcaagaagaagctgaagaagatcaaagaagtggatgaagatggtaatgag
caggaagtagtagaggaggaggaagaggaagaagaggagcacccgaaggggccggacctg
aagcttgcatctcgcagggatatgtacagcatctgccagggtgcaggactggatggcctg
gccaagaagtttggtctgactccagagcagtttggagagaacctacgtgacagttaccag
cgtcacgagacggagcagtttcctgctgagccattggagctggctaaggactacatctgc
agccagttcagcacagcggaggcagtactggaggggactcgctacatggtcgccatgcag
atcgctcgggagcctctagtcagacatgtgctccgacagacgttccaggaaagagccaag
atcaacatcaaacccaccaagaagggaaagaaggatgtggatgaggcccattatggcttc
tcctttaaatacctgaaaaacaagcctgtaaaggagctgaatggagaccagttcctcaag
atgttgcaggcagaggaagagggcctgctcaccattaacgtctgtattgacctgattgga
gtgaaggggtacggaggtgaccaggcatactatgaagagataaagcagttttactacaga
gatgagttcagccaccaggttcaggagtggaacagacagcgcactctggccatcgagcgc
tccctcaaacagttcctttacccgcagatggcgaaagagctgaagaacaaacttattgca
gaagcaaaggagaacatcatcaaggcctgcagcaggaagctgtataactggctgaaggtg
gcgccctatcgccccgaccaacaagtggaggaggaggaggacgaggagctcatgtctgag
gcccagggcaaagggatccgcgtgctgggagtggccttctcatccagcagagacacccca
gtgttctgcgccctggtgaatggtgacggagaagtgggggatttcctcaggcttccttac
ttcctgaagaggaggaacgcatggagggaggatgaaagggagaaaaagatccacgatatt
gaaaccctgaagaagtttctgaacagcaagaagcctcacatcatcgctatagctggggag
aacagggatgcccagatggtgattgaggacattaaacgcactgccagtgagctggagcag
gagtcctctttccccaccattggggtggagctggttgacaatgaactggccatgctctac
atgaacagcaagaagtcagaggcagatttccgggactacccccctctcctgagacaggct
gtgtctgtggccaggaagatccaggatcccctggtggagtatgctcaggtgtgcagcagt
gacgatgacatcctctgcctcaagttgcaccctttgcaggagcatgtagtgaaggaggac
ctgctgaatgctctgtactgtgagttcatcaaccgggtgaatgaagtgggtgtggatgtg
aaccgggccatggcccacccctacacccagagcctgttgcagtacgtctgtggcctaggg
cccaggaagggatcccacctgctcaggatcctgaagcaaaataacactcgtctggagaac
cgcactcagctggtcaccatgtgtcacatgggccccaaggttttcatcaactgtgctggt
ttcataaagattgacacagcttctctgggagatagtactgactcctatattgaggttctg
gatgggtcacgggtgcacccagagacctatgagtgggccaggaagatggccgtggatgct
ctggagtacgatgagtcagcggaggacgccaacccggccggagcactggaggagatcctg
gaaaacccagagcggctcaaagacctggacttggatgccttcgctgaggagctggaaaga
cagggttatggtaacaagggcatcaccctgtatgacatccgtgctgagctgagctgcagg
tacaaagacctgaggtccacctacagaggacctaacacagaggagatcttcaacctgctc
accaaggagacaccagagaccttctacatcggtaaacttattaccagtgtggtgacaggc
attgctcaccggcgcccccagggggagagttatgaccaggccataaggaatgatgagaca
ggtctgtggcagtgtcctttctgtcagcaggacaactttcctgagctcagtgaggtgtgg
aatcattttgatagtggctcctgccctggccaagctattggggtccgctgtcgcatggac
aacggagtcaccggctttatccctaccaagttcctcagtgacaaagtggtcaagcaccct
gaagaaagggttaaggtgggcatgacagtgcactgcaggatcatgaagattgacattgag
aagctcagtgtggatctgacctgtcggacgtcagacctgtcggataagaacaacgactgg
aagcttcccaaggacacctactacgactttgacactgagacagaggatgtgaagcaggag
gaggaggccaagaagaaacagcagagaacaacctacattaagagggtgatagcccaccca
tcgttccataacatcaacttcaagcaggcagagaagatgatggagtccatggaccaggga
gatgtgatcatcaggcccagtagtaagggagagaaccacctgactgttacttggaaggtt
gctgatagcatctaccagcacattgacgtacgagaggagggcaaggagaacgccttcagc
ctgggacataccctgtggatcaacactgaggaatttgaagatctggatgaaatcacagcc
agatacgttcaaccaatggctgcgtttgctcgcgatctgctcggtcacaagtattttcaa
gaatgcaatggtggagaccgaaagaaaatggaggaggtcttggtgaaaagcaagaaggag
aagcctacattcatcccctactatgtgtctgcctgtagagagctgccagggaagtttctg
ctcggttaccagccccgtgcaaagccaagggttgagtttgtgactgtcacgcctgagggg
ttcagatacagaggacagatttttcccacagttaatggacttttccgatggttcaaagat
catttccaggatccagtggcagggattactcccagcagcagcagtagaacacgaacccca
gcctctgtcaatgccacgccagccaatattaacattgcagatctgactcgtgcagtgaac
gccctccctcagaacatgacctctcagatgttcagtgccattgccgctgtaacgggccag
ggccagaaccccaacaccacacctgccggttgggcatccagccagtacggctacactggg
gacagcagcggtggggggggcagcagcagcgcctatcacgtgtttgccacaccagctcag
cagcccattgctactccccttctgacgccaagctattcatacaccacccccacccctagc
cagcagcagactatcaccacaccccaataccccagcagcactccccagtcctcacacggc
tcacaaggacatggacaccgcccttcctcctccacaccaacatcatcatcctcttcccgc
caccacaggacaccaacaccaaaggcaacttcccacacagcagtggactggggcaagatg
gccgagcagtggctccaggagaaagaggcagagcgcaagaagacgaggcccagaatgacc
ccacgaccttctccaagccccatgattgagagcacgcccatgtccctcgctggagacgcc
acaccgctgctggatgagatggatcgctag
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integrated database retrieval system
