Oncorhynchus tshawytscha (Chinook salmon): 112267120
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Entry
112267120 CDS
T05605
Name
(RefSeq) protein Smaug homolog 2 isoform X1
KO
K27396
protein Smaug
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112267120
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112267120
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PHAT
SAM_1
SAM_2
Motif
Other DBs
NCBI-GeneID:
112267120
NCBI-ProteinID:
XP_024300975
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All DBs
Position
LG14:35655628..35672881
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AA seq
682 aa
AA seq
DB search
MMFRDQVGILTDWFKGWNECEQTVALLSLLKRASRTQARFLHICLEHWLADCTEIHILEA
EANNADIVSQWHQEPMEKAVSLLLSHLPLLQPRNSEAKCEYMKLLQKVLSYTIESSLFVE
ESRQLLSYALIHPATTLDDRTSLAMWLNHLEEHLSSGYPGPSSRPPSGPYHPRQGSDEWP
GSAEGLDPGHGWLDKPPSSSSSPAGQNGHMSFQGGMSSPINSNNAGMGQMGQPSPLKRSL
SLIPSSPQVCGADWLSQDDLGGRQAFDHAPLSPQSSVASSGSEQTEDQGSRNTFQEDGSG
MKDVPMWLKSLRLHKYAALFSQMTYEEMMILTEHHLESQVCHRLSQNVTKGARHKIALSV
QKLRERPSVLKSLEKDILEGGNLRNALQELQQIIITPIKVYSYSPPSVSHRDMEGTGSPS
DHSNPGEDKDLAQEGFQPHNPPPCDGESSATPISDRDIAGQFTRVMGKVCTQLLVSRPDE
ENISCYLQLIEKCLTHEAFTETQRKRLVSWKQQVLKLLRLFPRKAMLDMPVYRQKGWAYG
SNSLPTAGSVSAGGLARRGQRSFQLPPRGLTAGRMGLLSPGGIGVASPRHTLTSPTLPGQ
GRQNLWFANPGGSNSMPSQSRSSVQRTHSLPVHTSPQTMLLFQQQECQVPGADLEINPTL
ESLCLSMTEHALGDGMDRTSTI
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgatgttccgagaccaggtgggcatcctgacggactggttcaagggctggaacgagtgt
gagcagacggtggcgcttctttccttgctgaagagagcgtctcgtacccaggcccgcttc
ctgcacatctgcctggagcactggctggcagactgcactgagatccacatcctggaggct
gaggccaacaatgcagacattgtgagccagtggcaccaggagcccatggagaaggcggtg
tccctgctgttgtcccacctacccctgctgcagccccgtaacagcgaggccaagtgtgag
tacatgaagctgctgcagaaggtgctgagctataccattgagagcagcctgtttgtggag
gagagcagacagctgctgtcctacgccctcatccacccggccaccaccctggacgaccgc
acctcgctggccatgtggctcaaccacttggaggagcacctctccagcggctacccaggg
ccctcctcccggcccccctccggcccctaccacccccgtcagggttcagatgagtggccg
ggctccgcggagggcctggaccctggccacggctggctggacaagcccccctcctccagc
tcctcccctgcagggcagaatggacacatgtctttccagggcgggatgtcctcgcccatc
aacagcaacaatgcaggcatgggtcagatgggccagcccagtcctctgaagaggtccttg
tccctgatcccctccagtccccaggtctgtggcgcagattggctgagccaggatgacctg
ggggggcgacaggcttttgaccacgcccccctgtccccccagagtagtgtggcatcctca
ggcagcgagcagactgaggaccagggctccagaaacaccttccaggaggacggcagtggc
atgaaagatgtgcccatgtggctgaagagcctccgtcttcataagtacgcagcacttttc
tcccagatgacttatgaggagatgatgattctgacagagcaccacctggagtcacaggtt
tgtcatcgtttgtcacagaatgtgaccaaaggtgcgcggcacaagatagccctgagtgtc
cagaagctgagggagaggccaagcgttctcaagtctttagagaaggatatattggagggg
ggcaacctgcgtaacgccctacaggagctacagcagattatcatcacccccatcaaggtc
tacagctacagccctcccagtgtttcccacagagatatggaggggactggatccccctca
gaccactccaaccctggggaggacaaggacctggcccaggagggcttccagccccacaac
ccccctccctgcgacggggagtcctcagccacacccatctcagaccgcgacattgctggc
cagttcacacgtgtcatgggtaaagtgtgcactcaactactggtgtccaggccggacgag
gagaatatcagctgttacctgcagctcattgagaaatgtctgacacatgaggctttcaca
gagactcagaggaagagactggtctcctggaagcagcaggttctcaaactgctccgcctg
ttcccaagaaaagccatgctggacatgcctgtgtaccgacagaaaggctgggcatatggt
tccaactccctccccacagcaggctctgtgagtgctgggggtctggcacgtagggggcag
aggtcattccagttgccccctcgtggcctcactgccgggcgcatgggtctcctgagtcca
ggtggcatcggggttgcctcccctcgccacaccctcaccagccccacactgccaggccag
ggcagacagaacctgtggtttgccaaccctggaggcagcaacagcatgccaagccagagt
cgcagctccgtgcaacggacccactcactccctgtccacacctccccgcaaaccatgctc
ctgttccagcagcaagaatgccaagttccaggtgcagacctggagatcaaccccaccctg
gagtcactgtgcctcagtatgacagagcatgccttaggggatggaatggaccgaacatca
acaatatga
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