Oncorhynchus tshawytscha (Chinook salmon): 112267122
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Entry
112267122 CDS
T05605
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112267122
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112267122
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
SALM family
112267122
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
112267122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
LRR_1
LRR_5
fn3
Ig_2
ig
LRR_9
Ig_DSCAM-DSCAML_C
DUF4834
C2-set_3
Sp38
Motif
Other DBs
NCBI-GeneID:
112267122
NCBI-ProteinID:
XP_024300980
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Position
LG14:35780540..35913461
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AA seq
770 aa
AA seq
DB search
MERLVVCVLLCVLLCAVLVKGYNCPGRCICQHLSPTLTLLCAKTGLLFVPPTIDRKTVEL
RLTDNFITIIRRKDFFNMTSLVHLTLSRNTISQITPNAFLGLRSLRALHMDGNRLSVIKS
DHFKGLVNLRHLILGNNQIHHVAPTSFDEFVSTIEDLDLSNNNLRTLPWEEIGKMSHINT
LTLDHNLIDHIGAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSDAKGSNPSSLAV
SFGGNPLHCNCELLWLRRLTREDDLETCASPEHLMDKYFWSIQEEEFICEPPLITKHIST
KPYVMEGQGVTLKCKAMGDPDPAIHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGA
FNCVASNAAGIATAAVEINMIPLPLLVNNTLHHMREADRGLSDITTSSKSGNDTKGHDKH
QDKRVVVAELTSSSAVIRWPSERHIPGIRMYQIQYNSTADDTLVYRMIPSTSKTFLINDL
AAGREYDLCVLAVYDDGITSLTATRVVGCVQFHTASEVSQCRFIHSQFLGGTMIIIIGGI
IVASVLVFIIILMIRYKAHSSLEDSKAKVSSSMHSQTNGSQHRLQRSTSKQPAEDSHQRE
AQPVAAKECMALVLKVDSDKREWDTPPTTMAIQEVELPPLPTDKMKRTSLDVQCSGTGPP
SEDTQTDSSLTGSTMSLCLLGPNAGTKEAPRLKDKKSALANMGFNNELARTRHRFSFDGG
DYSIFQSHSYPRRARTRRHKSTNQLNVESSPLANRRVTFSSTEWMLESTV
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtctggttgtgtgtgtgctgctgtgtgtactgctgtgtgcggtgctggtgaag
ggctacaactgccccggccgctgcatctgccagcacctctcccccactctgactctgctc
tgcgctaagaccggtttgttgtttgtacctccaaccatcgaccgcaagaccgtagagctg
cgtctcacagacaacttcatcaccattatccgcaggaaagactttttcaacatgaccagc
ctggtccacctcaccctgtcccgtaacaccatcagccagatcacgcccaacgccttcctg
ggcctgcgctctctacgagccctccacatggatggcaaccgcctcagtgtcatcaagagc
gaccacttcaaaggcctggtcaacctccgccacctcatactggggaacaaccagatccac
catgtggcccctacctcctttgatgagtttgtgtcgaccatcgaggacttggatctgtcc
aacaacaacctgaggaccctgccctgggaggagataggcaagatgagccacatcaacacc
ctcacccttgatcacaacctgattgatcacattggagctgggactttcacgctcctcacc
aagctggttcgtctggatatgacctccaaccggctgcagaagctaccaccggacagcctg
tttcagcacgcccaggtgctgtcagatgccaagggctccaacccgtcctccctggcagtg
agcttcgggggaaaccctctccactgtaactgtgagctgctgtggctccgcagactgacc
cgggaggatgacctggagacctgcgcctccccagagcatctcatggataagtacttctgg
tccatccaggaggaggagttcatctgcgagcccccgctcatcaccaaacacatatccacc
aagccctacgtcatggagggtcagggggtcaccctcaagtgcaaggccatgggagacccg
gacccagccatccactggcgcttccctgacggtaagctggtgcacaacaactcccgcact
atcctgtatgacaacggtaccttggacatcctcatcaccaccttaaaggacagtggtgcc
ttcaactgtgtggcctccaatgctgccggcatcgccacagctgctgtggagatcaacatg
attcctctgccattgctcgtcaacaacacattgcaccacatgcgcgaggccgatcggggc
ctctctgacatcaccacctcctcaaagtcaggcaacgacaccaagggccatgacaagcac
caggacaagagagtggtggtggccgagctgacctcctcctcggctgtgattcgttggccc
tccgagcgccacatcccaggcatcaggatgtaccagatccagtacaacagcactgcagac
gacacactggtttacagaatgatcccgtccaccagtaagaccttcctgatcaacgacctg
gcggcgggccgggagtatgacctgtgtgtcctggcggtgtacgacgacggcatcacctct
ctgacggccacgcgcgtggtgggctgtgtccagttccacacggccagcgaggtcagccag
tgtcgcttcatccacagccagtttttgggtggcaccatgataattatcattggcggcatc
attgtggcctcagtgctggtgtttattatcatcctcatgatccgttacaaggcgcacagc
agcctcgaggacagcaaggccaaggtcagctccagcatgcactcccagaccaacggcagc
cagcacagactccagcgctccacctccaagcaacctgctgaggacagccaccagagagaa
gcccaaccggtggcagccaaggagtgcatggccctggtgctgaaggtggacagtgacaag
agggagtgggacacccctccaaccactatggccatccaggaagtggagctgccccccctg
cccacggacaagatgaagaggaccagcctggacgtccagtgctctggaactggcccccca
tcggaggatacacagacagacagcagcctgacgggctccaccatgtccttgtgtctccta
ggccccaacgccggcaccaaggaggcccccaggctcaaggacaagaagagcgccctggcc
aacatggggtttaataatgagctggcacgaactaggcacaggttcagctttgacggtgga
gactactccatatttcagagccacagttacccacgcagagcgcggacgaggcggcacaag
tccaccaaccagctcaacgtggagtcctcaccgctcgccaaccggagagtcactttcagc
agcactgaatggatgctggagagcacagtgtaa
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