Oncorhynchus tshawytscha (Chinook salmon): 112267172
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Entry
112267172 CDS
T05605
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04142
Lysosome
otw04144
Endocytosis
otw05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112267172
04142 Lysosome
112267172
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112267172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112267172
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112267172
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
112267172
Exosome [BR:
otw04147
]
Exosomal proteins
Proteins found in most exosomes
112267172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
112267172
NCBI-ProteinID:
XP_024301118
LinkDB
All DBs
Position
LG14:complement(37743512..37763784)
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPAKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHDGCEEPATHNALAKIYIDSNNNPERFLRENTF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
SHPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
MKTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDVELAEELLAWFLE
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPAGYGQPPQ
PGFGYGM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaatactacctatccgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaagtagtcatcattgatatggccgaccccaacact
cccatccgtagacccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagacgctgcaaaaaccctccagattttcaacattgagatgaagagcaaaatg
aaggctcacaccatgactgatgatgtcactttctggaagtggatctccctcaacactgta
gcacttgtcacagacaacgccgtctaccattggagcatggagggagactcccagccagcc
aaagtctttgaccgacactccagccttgcaggctgtcaaatcatcaactaccgcactgac
gccaaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtggga
gccatgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgca
ggctttgcccagttcaaaatggagggcaacacagaggaatccacactgttctgcttcgct
gtccgagggcaagctggaggaaagttacacataattgaagtggggaccccaccaacaggc
aatcagccgtttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgac
ttccctgtagctatgcagatcagctctaagcaggatgttgtctttctcatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgtatttacatgaaccggatcagc
ggggagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaac
aggaaaggacaggtgttgtccgtgtgtgtggaggaggagaacatcatcccctacatcacc
aacgtgctccagaacccagacctggccctgcgtatggctgtgcgcaacaacctggccggg
gccgaggagctgttcgcccgcaagttcaacaccctgttcgctgcagggaactattctgag
gctgccaaggtggccgccaatgctcccaagggtatcctgcgtaccccagacaccatccgt
aaattccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttgga
atcctgctggaccagggccagctcaacaagtttgagtccctggagctgtgcaggcccgtc
ttacagcagggacgcaagcagctgctggagaaatggctgaaagaggacaagctggagtgt
tctgaggagctgggggacctggtgaagtcagtggaccccactctggccctcagcgtctac
ctcagggccaacgtgcccaacaaggtcatccagtgcttcgctgagaccggacagttccag
aaaattgtcctctatgctaaaaaggtgggttacaccccagactggatgttcctgctgagg
aacgtgatgagaatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggac
gaggagcctctggctgacatcacacagatcgttgacgtgtttatggagtataacctgatc
cagcagtgtacctccttcctcctggatgccctgaagaacaacaggcctgctgaggggcct
ctgcagacacgcctgctggagatgaatctggtccacgccccacaggtggctgatgccatc
ctgggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaag
gctggcctgctgcagagggctctggagcattataccgacctgtacgacatcaagcgagct
gtggtgcacacacacctgctcaaccctgagtggctggtgaacttttttggctccctgtca
gtggaggactctctggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctg
cagatctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcacc
gagctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccatcgtt
aacttcagccaggacccagaggtccacttcaagtacatccaggccgcctgtaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaagctaagctgactgatcagctccccctgatcatcgtgtgtgac
cgcttcgactttgtccacgacctggtcctctacttgtaccgcaacaccctgcagaaatac
attgagatctatgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctg
ctggatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacag
ttctccactgatgaactggtggctgaggtggagaagaggaacagactgaagctgctccta
ccctggctggaagcccgtatccacgatggctgtgaggagccagctacccacaatgccctg
gccaagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttc
tacgacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtg
gcctacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctg
ttcaagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagtgtg
ctgctggagactaacccattcagaagacccctcatcgaccaggttgttcagactgccctg
tctgagacccaggacccagaggaggtttcagtcacagtcaaggccttcatgactgcagac
ctccccaacgaactcattgagctgctggagaagatcgttctggataactcagtcttcagt
gaacacagaaaccttcagaacctgctgattctaacagccatcaaggcagaccgtacccgt
gtaatggagtacatcaaccgcctggacaactacgacgcccctgacatcgctaacatcgcc
atcagcaacgagctctttgaggaggcattcgccatcttcaggaagtttgacgtcaacacc
tctgccgtgcaggttctgattgagcacattgggaacctggaccgggcctatgagtttgct
gagcgctgcaatgagcctccagtgtggagccagctagccaaggctcagctccagaagggt
ctggtgaaggaggccatcgactcctacatcaaggctgacgacccctctgcctacatggag
gtgggccaagctgcagcccagagcggtaactgggaggacctagtgaagttccttcagatg
gcccgtaagaagtcccgtgagtcctacgtggagaccgagctcatcttcgccctggccaag
accaaccgcctggctgaactggaggagttcatcaatggacccaacaacgcccacatccaa
caggtgggtgacaggtgttatgatgagaggatgtatgatgcggctaagctgctctacaac
aatgtgtccaactttgggcggctagcgtccaccctggtccacctgggagagtatcaggcc
gccgtggacggagcccgcaaggccaacagcacccgcacctggaaagaggtgtgctttgcc
tgtgtggatgggaaagagttccgcctggcccagatgtgtggcctgcacatcgttgtccat
gctgatgaactggaggagctcatcaattactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctgggcctggagcgggctcacatgggcatgttcaccgag
ttggccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcg
gagctggtcttcctctatgacaagtatgaggagtttgacaatgccatcatcaccatgatg
agccacccctccgatgcctggaaggaaggacagttcaaagacatcgtcaccaaggtggcc
aatgtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactg
aacgacctgctcatagtgttatcaccacgactcgaccacacccgcgctgtcaacttcttc
atgaagaccaagcagctgtcactggtcaagccatacctgcggtcagtgcagaaccacaac
aacaagggtgtcaacgaagcacttaacaacctcttcatcacagaggaagactatgcggcc
ctgcgtgcctccatcgatgcctacgacaattttgacaacatcaccctggcccagggcctg
gagaagcacgagctgattgagttcaggaggattgctgcatacctcttcaaaggcaacaac
cgctggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcag
tatgcgtctgagtcaaaagatgtggagctggctgaggagttgttggcctggttcctggag
gaggataagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcct
gacgtagtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaag
cttgacgcctcagagtcactaaggaaacaggaggagcagaacaccgagtcccagcccatt
gtttatggcacgccccagctcatgctcacttcaggccctggtcaggctgtgcccccccag
cctggctacggaggttacggctacccagcagcacccgctggttacggccagcctccccag
cctggctttggctatggcatgtga
DBGET
integrated database retrieval system
