Oncorhynchus tshawytscha (Chinook salmon): 112267466
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Entry
112267466 CDS
T05605
Symbol
trpc2a
Name
(RefSeq) short transient receptor potential channel 2
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112267466 (trpc2a)
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112267466 (trpc2a)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
PKD_channel
Ank
Motif
Other DBs
NCBI-GeneID:
112267466
NCBI-ProteinID:
XP_042152501
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Position
LG14:48382462..48387457
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AA seq
847 aa
AA seq
DB search
MDNTTPDQWQAIVNKKLHFPPELIAAIQEDNALLVGSLLSTGDGIIRQLDESEDRLWREA
LNLSIRMGNEDTFSALMLGVKFDFRQIYEALLVAVDTNQPRVVKRLLDRLDQEKGNKMDV
RSFSMAIFDHSIDDSQFAPGVTPLTLACQKDLYDIVTMLTKKGHAIPLPHSISCTCLECR
NGRQYDLLKFSLSRINTYRGMASRAYLSITTEDAMLSAFRLSRELRKLSKKEPEFKPQYL
SLEELCQEFAVEMLAMCRNQSEVTTVLNICDDDNEDELDEQTFEEGIPTLSRLRLAVNYN
QKLFVSHPICQQVLSSIWCGNIPGWRGSKTVWKLTVSLGIFFTMPLLCMIYWVAPKSKIG
KTLKIPVIKFLLHSASYLWFIITLLAESIFMEMYRDEFASRQQNILYNSLHMIWVVGFFW
SECKNVWAEGLRGYIVDWSNILDMIVLSMYLASFGLRVLIMAIGHFVCQDQNLVEKCAYF
TQTLRDEWWQEDPQLISEILFAVTSMLSFTRLAYILPAHESLGTLQISIGIMIDDMMRFM
FLLMIIGTAFLCGLNNIYVPYATSPHLGRFNETFSFLFWTMFGASNQGYVDMPDFVLAQF
VGRVLYGVFTLVIVIILLNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGSTIPV
PFNLVPSPKALFYLLRGFFCCCKRNKIPDYPPIASMSNSTMNNSGEAGMDRVSYRLQVVK
ALVQRYIEAARREFGEATRKDVGNRITELNKGVGRLHSDMKKFYQNLQNSKSFGSKGDGG
NFLGKYIKGAQNNFKNFDKNEAMGNSPDLLPVNLHLVGVVEEGKKEEGKTEMIPGGVYRE
KHPHKQQ
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggacaatactacgccagaccaatggcaggcgattgtgaacaaaaagcttcatttcccc
ccggagctgatagcagccattcaggaagacaacgcacttctggtgggcagcctgctgtcc
acaggggacggcatcatccgccagctggatgagtctgaggaccgtctgtggagagaagcc
ctgaacctgtccatccgcatgggcaatgaggacactttctccgctctgatgctgggcgtc
aagtttgactttaggcagatctacgaggcgctgctggtggcggtggacaccaaccagccc
cgggtggtcaagaggctcctggaccgcctggatcaggaaaagggcaacaagatggatgtg
cgctcattctccatggccatatttgaccactccattgatgactcccagtttgcccccgga
gtgaccccgctgaccctggcctgtcagaaggacctgtatgacattgtcaccatgttgact
aagaagggtcatgccatccctctgcctcactctatctcctgtacctgtctggagtgccgg
aacggccgtcagtatgacctgctgaagttctctctgtctcgtatcaacacctaccggggc
atggccagccgggcatacctctccatcaccacagaggatgccatgctcagtgccttcaga
ctcagccgggagctacgcaagctctccaagaaagaacctgaatttaagccccagtacctg
agcctggaagagctgtgtcaggagttcgcagtggagatgctggccatgtgtcgcaaccag
agtgaggtcacaacggtcctgaacatctgtgatgacgataatgaagatgaactggacgag
cagacctttgaggaggggattccaaccctgtcacgcctacgccttgcagtcaattacaat
caaaaactgtttgtgagtcatcccatctgccagcaagtgctgtcgtccatttggtgtgga
aacatcccagggtggcggggcagcaagacggtctggaagctcacggtgtctcttgggatc
ttcttcaccatgcctctcctctgtatgatctactgggtcgctcccaagtccaagattgga
aagactttgaagatacctgtgatcaaattcctgctgcactctgcctcctacctgtggttc
atcatcacccttctagctgagtctattttcatggagatgtaccgcgatgagttcgcatcc
cggcagcaaaacatcctctacaactctctccatatgatctgggtggtcggtttcttctgg
agtgagtgtaagaatgtgtgggcggagggtctgaggggttacatcgtggactggtccaac
attctggacatgatagtactcagcatgtacttggcctccttcggtctgagagtcctcatc
atggcaattggtcattttgtttgccaagaccaaaacttggttgagaagtgtgcctacttc
acccaaacactgcgagatgaatggtggcaggaggaccctcagctgatctcagagattctg
ttcgctgtgaccagcatgctcagcttcacccgactggcctacatcctgcctgcccatgag
tctctgggtactctacagatctccattggtataatgatagatgacatgatgcggttcatg
tttctcttgatgatcattggaacagcttttctctgtggactgaataatatctatgtgccc
tacgcaacttctccacatcttggacgcttcaatgaaaccttcagctttctcttctggacc
atgtttggtgcatctaatcaaggctatgtggacatgccagattttgtcctggctcagttt
gtgggcagggtcctgtatggggtcttcactctcgtcattgtcattatcctgctcaatatg
cttatcgccatgatcactaattcattccagaagatagaggatgatgctgatgttgaatgg
aagtttgctcgttcaaagctctacttgagttacttcagagagggctccactatacctgta
cccttcaacctcgtcccctctccaaaggccttgttctacttactgaggggctttttctgt
tgctgcaaacgaaataaaattccagactatcctcctattgcctctatgtccaacagtaca
atgaacaacagtggagaggcagggatggaccgagtgtcatatcgcctgcaggtggtcaag
gcgctggtacagcgctacatagaagcagcccgcagggagtttggagaggcgacacgtaaa
gatgtggggaacaggatcacagaactgaacaagggggtggggagacttcactctgatatg
aagaagttctatcagaacctgcagaacagcaagtcctttggctcaaagggcgatggaggc
aacttcctgggcaagtacataaaaggagcacagaacaactttaagaactttgataaaaat
gaggcaatggggaatagcccagacctgttaccagtcaatctgcacctcgtaggggtggtg
gaggaggggaagaaagaggaggggaaaacagaaatgatcccaggaggtgtttacagagaa
aaacacccccacaaacaacagtga
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