Oncorhynchus tshawytscha (Chinook salmon): 112267651
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Entry
112267651 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112267651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112267651
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112267651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
zf-RING_Vps41
TPR_VPS8_2
zf_RING_Vps8_fungal
zf-RING_UBOX
zf-RING_5
Beta-prop_WDR5
zf-RING_2
ANAPC4_WD40
zf-RING_11
Beta-prop_EML_2
EIF3I
Beta-prop_WDR3_1st
WDR55
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
112267651
NCBI-ProteinID:
XP_042171410
LinkDB
All DBs
Position
Unknown
AA seq
1407 aa
AA seq
DB search
MSESPDTRSLVSASSQLNLMEIDTIDDKEFDIPQVDTPPTLESILNEPEDEEEPFILEDT
CLLNTENIDAHSCETSSLASSDSGDRTHLKRKRKTVELSTTVHGSVLRHSILKGISAQIV
SAADKVDAGLPTAVTVSGVIVVGTSHGLALVFDLNQALRLCLGSTATGAEYGAVSALSIN
HDCTRLLCGFAKGHITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELAFRRLMGMRTCESRCLFSGSKGEVCNVEPLFTAPDLKDHPITQYSLLAMASLTKILV
IGLKPSLKVWMTFPYGKTDPTSVPQLAWQFVPVQKVVNPVLAFCRGDTVHFLLVKKDETG
TIHVIKQRQLQLNCDIISLNWINSRTLVVMDSGEKLRVVDRPSQEELESLDVAEVQLVYN
SSHFKSLATGGNVSQALALVGEKACYQSVCSYAGQMVLLGTKSAHILTLRNWRERVDCLL
KQERFVEALSLAWSFHEGTAKAVLGLFGDPAKRKGVVADKMIEILFQYVERSVKKCPEHG
KIQVMEQHFQDMVPVMVDYCLQLQRTDLLFNQLYTRLVENCVARGVFLESLEPYIVSERL
GCVTAPVMRDLLTHLQDNNMMDSVENCLIHLDITSLDIQQVVQMCWDNQLYDAMIYVFNR
GMNDYITPMEKLFQVIGPPLREGRALTDEQVVMGNKLLVYISCSLAGRAYPLGDIPEDLV
SQVKNQVFEFLIRLHSAEAGQEEELYPYIRTLVHFHTPEFLNVLALTLEDFKNDKQALEY
QQRIVDILLKVMVENSDFTPSQVGSLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCSPDD
DSRHTERQQVLLELLQVGGVVQFDEGRLLGLAEKAEFYQICEFLYEQKHLYDKILDCYLR
DPLRKEEIFNYIHNLLSMPGYSSEEKHCVWDKALLHIAELVTLDPAKSADLVAMHFPEEV
RPIITRLQDDHLVFQFLRCLLDQSATSREGPHPQPLLRLSPDLHELHIGLLCRFTPRQLP
DFLKASQDYRLEEAVQITEQYQVHEATSYLLEKKGDSHGAFQVLLKTLKDKLSAVTSEKR
SEEXGETEREEESPLQRVEGSLGDIIALCHRSSQSLNQEQRGVLWFPLLEAMMSPQKLLK
GPDTRTTSEVLKELTMKVLNSMSSFIPLPAIIQRILQDPVYGKGKLAEIQGLILGMLETF
NYEQTLLETTTSLLNHDLHWSLSHLRAAVSRGLHPRQDHCNICLQQYRRRQDSPDDIIIF
SCGHLYHCQCLQRKGSGHAEPRLLQVWSCYKCISSQRGRGGDRVTTETGRGRSTSLAQTN
VMSREAGEDGKKVFAETTLDPQQSQSWDQLRCLYRGPSRVGLLLLSVFLSLLSPLSCYVS
LCIETWKTSPSVSGYTKGLAGINTSYC
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatcaccagatacacgcagtttggtttctgcgtcatcccagctcaatttaatg
gaaatagatacgatcgacgataaagagtttgacattccccaagttgacaccccgcctaca
ttggagagtatcctgaatgagcctgaggatgaggaggagcccttcatcctggaggacacg
tgtctgctgaacacagagaacatcgacgcccactcctgtgaaacctcctcactggccagc
tccgacagtggagaccgcacacacctcaaacggaaaaggaagacagtggagctcagcact
acagtccatggctctgtgcttcggcacagcatcctgaaaggcatctctgctcagatagtc
tcagccgctgacaaagtagatgctggactgccaactgcagtaactgtgtctggtgtgatc
gtagtgggaacgtctcatggcctggctctagtgtttgatctgaaccaggctctccgtttg
tgcttgggaagcacggcgacaggggcggagtacggagccgtctccgccctcagcatcaac
cacgactgcacccgcttgctctgtggcttcgccaagggacatatcaccatgtgggatctg
gccaatgggaagcttctgcgaaccattaccgacgcccacccacccggcaccgccatctta
catgtcaagttcaccgatgaccctacgctggcagtgtgcaacgacagcggtggctctgtg
tttgagctggctttcaggaggttgatggggatgcgtacatgtgagtctcgttgtctgttc
agtggctctaagggagaggtgtgtaatgtggagcctctttttaccgccccggacctgaag
gatcaccccatcacacagtactctctcctggccatggcctctcttactaagattctagtg
atcggactgaagccttctctcaaagtgtggatgacatttccctatggcaagacggacccg
accagtgttccccagctggcctggcagtttgtccccgttcagaaggtggtcaaccccgtc
ctggcattctgcagaggagacaccgtacacttcctgctggtgaagaaggatgagaccgga
accatccatgtcatcaagcaaagacagctgcagctgaactgtgacatcatcagtctgaat
tggatcaacagtcgtaccctggtggtgatggacagtggggagaagctgcgtgtggtggac
cgacccagccaggaggagctggagagcttggacgtggctgaggtgcagctggtctacaac
agcagccattttaaatcgctggcaacggggggaaacgtcagccaggcactggccctagta
ggagagaaggcctgctaccagtctgtctgcagctacgcaggacagatggtgttactgggg
accaagtcagcccacatcctgactctgaggaactggagggagcgggtggactgtctgttg
aaacaggaacgttttgttgaggctctgtccttggcctggtccttccatgagggcaccgcc
aaggctgtactggggctgtttggggacccagcgaagaggaaaggtgtagtggcagacaag
atgattgagattctgttccagtatgtggagcgctcagtgaagaaatgtccagaacacggc
aagatacaggtcatggaacaacatttccaggacatggtgcctgtcatggtagattactgt
ctgcagctgcagaggacggacctactgtttaaccagctgtatacccgcctggtggagaac
tgtgtggctcggggggtcttcctggagagtttggaaccctacatcgtgtcggagcgtctg
ggctgtgtgaccgctcccgtcatgagagacctgctgacccacctacaggataacaacatg
atggacagtgtagagaactgtctgatacatctggacatcaccagcctcgacatacaacag
gtggtccagatgtgttgggacaaccagctgtatgatgccatgatctacgtgttcaacagg
ggaatgaatgactacatcacccctatggagaaactcttccaggtcattggccccccgctg
agagaaggcagggccctcacagatgaacaggtggtgatgggtaacaagctgctcgtttat
atcagctgctctctggcaggccgggcctatccactaggagacatcccagaggacctggtg
tctcaagtcaagaaccaggtgtttgagttcctgatcaggctccactctgcggaggcgggt
caggaggaggagttgtacccttacatcagaaccctggtccacttccacacaccagagttc
ctcaacgttctggccctgacgttggaggactttaagaatgacaagcaggctctggaatac
cagcagaggattgtggacattttactgaaggtgatggtggagaacagtgacttcactccc
tctcaggtgggctctctgtttaccttcctggcccgccaactggccaaacctgacaacaca
ctcttcgtcaacaggaagctcttcgatcaggttctggagttcctgtgtagtccagacgac
gactccagacacacagagagacaacaggtgctgttggagctgctgcaggtgggaggtgtg
gtccagtttgatgagggacgactactgggactggctgagaaggcagagttctaccagatc
tgtgagtttctgtatgagcagaagcatctgtatgataagattctggactgctacctcaga
gaccctctgagaaaggaagagatcttcaactacatccacaacctgctgtccatgcctggc
tacagctcagaggagaaacactgtgtctgggacaaggccctgctgcacattgcggagctg
gtgacccttgaccctgccaagtcagctgacctggtggccatgcatttccctgaggaagta
cgacccatcatcaccagactacaggatgatcacctagtgttccagttcctgaggtgtctt
ttggaccagagtgctacctccagggaaggccctcatccccagcctctcctaagactgagc
cccgacctgcatgagctccacatcggcttgctgtgccgcttcactccccggcagctccct
gacttcctcaaggcctctcaggactacagactagaggaggccgtccagataacagaacag
taccaggtccatgaagctacatcctatctgttggaaaagaaaggtgattctcacggagcc
tttcaggtcctgctgaagacgctgaaggacaaactcagcgctgtcacctcagagaaaagg
agtgaagagnngggggagactgagagggaggaagagagtccactgcagagagtggagggg
tcattgggtgacatcatcgctctgtgtcacaggagctcccagagtctcaaccaagaacag
agaggggtgctgtggttccctctgctagaagctatgatgtcaccacagaagctgctcaag
ggaccggacacacgcactacatcagaggtattgaaggagctcaccatgaaggtcctgaac
agtatgagtagcttcatccccctgcctgctatcatccagcgcattctacaggaccctgtg
tatggtaaaggaaagttggctgagatacaaggccttattctgggtatgctggagaccttc
aactatgaacagacgttactggagacgaccaccagtctgttgaaccatgacctccattgg
tccctgtctcacctgcgagcggcggtcagcagggggctccacccccgtcaggaccactgt
aacatctgcctgcagcagtacaggagacgtcaggacagcccagatgacatcatcatattc
agctgcggccacctgtaccactgccagtgtctgcagcggaaggggagtggccacgcggag
cccaggttgctgcaggtctggagctgctacaagtgtatctcctcacagagagggaggggc
ggggacagggtcaccacggagaccgggagggggcgaagcacctccctcgcacagaccaac
gtgatgtccagggaagcaggggaagatgggaaaaaggtgtttgctgagaccacgttggac
ccccagcagagtcagtcctgggaccagctacgatgtctctacagaggaccttccagggta
ggtctgctactcctttctgtgtttctctctctcctctctcctctctcatgttatgtttct
ctctgcattgaaacgtggaagacgtcaccgtcagtaagtggatacactaaaggattagct
ggcatcaatacttcctattgctga
DBGET
integrated database retrieval system
